Detailed information NTG0099339

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: QMG91_RS15815
• Genome accession: NZ_AP027049
• Coordinates: 3479374..3480360 (-)
• Length: 328 a.a.
• NCBI ID: WP_004401303.1
• Uniprot ID: A0AAV2VJY7
• Organism: Vibrio nigripulchritudo strain TUMSAT-V.nig2
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 3474374..3485360

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
QMG91_RS15805 (TUMSATVNIG2_30810)	-	3475701..3476318 (-)	618	WP_022549552.1	DUF1449 family protein	-
QMG91_RS15810 (TUMSATVNIG2_30820)	mutS	3476756..3479287 (+)	2532	WP_281830475.1	DNA mismatch repair protein MutS	-
QMG91_RS15815 (TUMSATVNIG2_30830)	rpoS	3479374..3480360 (-)	987	WP_004401303.1	RNA polymerase sigma factor RpoS	Regulator
QMG91_RS15820 (TUMSATVNIG2_30840)	nlpD	3480419..3481348 (-)	930	WP_004401304.1	murein hydrolase activator NlpD	-
QMG91_RS15825 (TUMSATVNIG2_30850)	-	3481358..3481984 (-)	627	WP_022597716.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
QMG91_RS15830 (TUMSATVNIG2_30860)	surE	3481985..3482731 (-)	747	WP_004401306.1	5'/3'-nucleotidase SurE	-
QMG91_RS15835 (TUMSATVNIG2_30870)	truD	3482759..3483802 (-)	1044	WP_281827611.1	tRNA pseudouridine(13) synthase TruD	-
QMG91_RS15840 (TUMSATVNIG2_30880)	ispF	3483806..3484282 (-)	477	WP_004401308.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
QMG91_RS15845 (TUMSATVNIG2_30890)	ispD	3484292..3485005 (-)	714	WP_281827613.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
QMG91_RS15850 (TUMSATVNIG2_30900)	ftsB	3485014..3485298 (-)	285	WP_004401310.1	cell division protein FtsB	-

Sequence

Protein

• Length: 328 a.a.
• Molecular weight: 37786.74 Da
• Isoelectric Point: 4.6196

>NTDB_id=99339 QMG91_RS15815 WP_004401303.1 3479374..3480360(-) (rpoS) [Vibrio nigripulchritudo strain TUMSAT-V.nig2]
MSISNAVTKVEEEFDYEAVGMEQTTREESTLTQEKQSEQKEEFEVSAKSLDATQLYLGEIGFSPLLTAEEEVLYARRALR
GDEAARKRMIESNLRLVVKISRRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERALMNQTRTI
RLPIHVVKELNIYLRTARELSQKLDHEPTAEEIAQQLDKPVDDVSKMLRLNERVSSVDTPIGGESEKALLDIIPDVNNSD
PEVCTQDDDIKHSLIDWLDDLNPKQKEVLARRFGLLGYEPSTLEEVGREINLTRERVRQIQVEGLRRLREILVKQGLNME
SLFNVEND

Nucleotide

• Length: 987 bp

>NTDB_id=99339 QMG91_RS15815 WP_004401303.1 3479374..3480360(-) (rpoS) [Vibrio nigripulchritudo strain TUMSAT-V.nig2]
ATGAGTATCAGCAATGCAGTAACGAAAGTCGAAGAAGAGTTTGATTACGAAGCGGTAGGTATGGAACAAACCACCAGGGA
AGAATCTACTCTCACTCAAGAAAAACAGTCTGAACAGAAAGAAGAATTTGAGGTAAGTGCAAAAAGTTTAGACGCCACTC
AACTGTATCTCGGAGAGATCGGTTTCTCACCTCTTCTCACAGCAGAAGAAGAAGTCCTGTATGCACGTCGCGCACTTCGA
GGAGACGAAGCTGCACGCAAACGCATGATCGAAAGTAACCTTCGTTTAGTTGTTAAAATCTCTCGCCGTTACGGTAACAG
AGGGCTGGCACTGCTCGATCTGATCGAAGAAGGTAACCTAGGACTGATCCGTGCAGTTGAGAAATTTGATCCTGAAAGAG
GTTTCCGTTTTTCAACGTACGCAACATGGTGGATTCGTCAAACCATCGAACGTGCATTGATGAACCAAACTCGCACTATT
CGTTTGCCCATACACGTAGTGAAAGAGCTGAATATCTATTTAAGAACGGCTCGGGAGCTATCGCAAAAACTGGATCATGA
ACCAACGGCAGAAGAAATTGCTCAGCAACTTGATAAGCCCGTTGATGATGTCAGCAAAATGCTTCGTCTGAATGAAAGAG
TCAGTTCCGTGGACACCCCAATCGGTGGTGAAAGCGAGAAAGCGCTTCTTGATATCATTCCAGACGTCAACAACTCTGAT
CCTGAAGTCTGTACTCAAGACGATGACATCAAACATTCTCTGATCGACTGGCTGGATGATTTGAATCCTAAGCAGAAAGA
AGTACTTGCACGCCGTTTTGGTCTTCTGGGGTATGAACCTTCAACACTGGAAGAAGTGGGTCGTGAGATCAATTTGACTC
GAGAGCGTGTACGTCAGATCCAAGTAGAAGGTCTTCGTCGACTTCGTGAGATCCTGGTGAAACAGGGTCTGAACATGGAA
TCATTGTTCAACGTTGAAAATGACTAA

Domains

Predicted by InterproScan.

• Sigma-70 region 2 (Sigma70_r2) (89-158)

• Sigma-70, region 4 (Sigma70_r4) (257-310)

• Sigma-70 region 3 (Sigma70_r3) (169-242)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (51-84)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	83.284	100	0.851