Detailed information    

insolico Bioinformatically predicted

Overview

Name   comK   Type   Regulator
Locus tag   AAHT66_RS20475 Genome accession   NZ_CP154441
Coordinates   3950055..3950633 (-) Length   192 a.a.
NCBI ID   WP_087991281.1    Uniprot ID   -
Organism   Bacillus inaquosorum strain XN303     
Function   activate transcription of late competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 3945055..3955633
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AAHT66_RS20445 (AAHT66_20445) - 3945560..3946183 (-) 624 WP_087991287.1 TVP38/TMEM64 family protein -
  AAHT66_RS20450 (AAHT66_20450) - 3946334..3946696 (+) 363 WP_087991286.1 hypothetical protein -
  AAHT66_RS20455 (AAHT66_20455) - 3946921..3947121 (+) 201 WP_087991285.1 DUF3311 domain-containing protein -
  AAHT66_RS20460 (AAHT66_20460) - 3947118..3948587 (+) 1470 WP_087991284.1 sodium:solute symporter family protein -
  AAHT66_RS20465 (AAHT66_20465) - 3948634..3948903 (-) 270 WP_087991283.1 excalibur calcium-binding domain-containing protein -
  AAHT66_RS20470 (AAHT66_20470) - 3949111..3950010 (+) 900 WP_333516301.1 SDR family oxidoreductase -
  AAHT66_RS20475 (AAHT66_20475) comK 3950055..3950633 (-) 579 WP_087991281.1 competence transcription factor ComK Regulator
  AAHT66_RS20480 (AAHT66_20480) - 3950926..3951159 (+) 234 WP_003239440.1 IDEAL domain-containing protein -
  AAHT66_RS20485 (AAHT66_20485) - 3951186..3952043 (-) 858 WP_087991280.1 SDR family oxidoreductase -
  AAHT66_RS20490 (AAHT66_20490) - 3952155..3953684 (+) 1530 WP_087991279.1 FAD-dependent oxidoreductase -
  AAHT66_RS20495 (AAHT66_20495) hemAT 3953824..3955119 (+) 1296 WP_253268988.1 heme-based aerotactic transducer HemAT -

Sequence

Protein


Download         Length: 192 a.a.        Molecular weight: 22350.68 Da        Isoelectric Point: 8.0130

>NTDB_id=993389 AAHT66_RS20475 WP_087991281.1 3950055..3950633(-) (comK) [Bacillus inaquosorum strain XN303]
MSQKTDAPLESYEVNGATIAVLPEEIDGKICSKIIEKDCVFYVSMKPLQIVDRSCRFFGSSYAGRKAGTYEVTKISHKPP
IMVDPSNQIFLFPTLSSTRPQCGWISHVYVKEFKPTAFDDTEVTFSNGKTMELPISCNSFENQVYRTAWLRTKFQDRIEH
RVPKRQEFMLYPKEERTKMIYDFILRELGERY

Nucleotide


Download         Length: 579 bp        

>NTDB_id=993389 AAHT66_RS20475 WP_087991281.1 3950055..3950633(-) (comK) [Bacillus inaquosorum strain XN303]
ATGAGTCAGAAAACTGACGCACCTTTAGAATCGTATGAAGTAAACGGCGCAACAATTGCCGTGCTGCCAGAAGAAATTGA
TGGCAAAATCTGTTCCAAAATTATTGAAAAAGACTGCGTATTTTATGTCAGCATGAAGCCGCTGCAAATCGTCGACAGAA
GCTGCCGTTTTTTCGGATCAAGCTATGCGGGAAGAAAAGCGGGAACTTATGAAGTGACAAAAATTTCACACAAACCGCCG
ATCATGGTGGACCCTTCGAACCAAATCTTTTTATTCCCTACACTTTCTTCGACAAGACCCCAATGCGGCTGGATTTCCCA
TGTGTACGTAAAAGAATTCAAACCGACTGCATTCGACGATACGGAAGTGACATTTTCGAACGGCAAAACAATGGAGCTGC
CGATCTCCTGCAATTCGTTCGAAAACCAGGTTTACCGGACAGCGTGGCTCAGAACCAAATTCCAGGACAGAATCGAACAC
CGCGTGCCAAAACGGCAGGAATTTATGCTGTATCCGAAGGAAGAGCGGACGAAGATGATTTATGATTTTATTTTGCGAGA
GCTCGGGGAGCGGTATTAG

Domains

Predicted by InterproScan.

ComK protein (ComK)

(10-158)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comK Bacillus subtilis subsp. subtilis str. 168

96.875

100

0.969

Multiple sequence alignment