Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   AAHT66_RS18310 Genome accession   NZ_CP154441
Coordinates   3551574..3551852 (-) Length   92 a.a.
NCBI ID   WP_087992212.1    Uniprot ID   -
Organism   Bacillus inaquosorum strain XN303     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 3546574..3556852
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AAHT66_RS18290 (AAHT66_18290) ade 3546673..3548406 (-) 1734 WP_087992208.1 adenine deaminase -
  AAHT66_RS18295 (AAHT66_18295) ktrC 3548562..3549227 (-) 666 WP_087992209.1 Ktr system potassium transporter KtrC -
  AAHT66_RS18300 (AAHT66_18300) - 3549299..3550126 (-) 828 WP_253269054.1 gamma-glutamylcyclotransferase -
  AAHT66_RS18305 (AAHT66_18305) kinC 3550142..3551428 (-) 1287 WP_253269053.1 two-component sensor histidine kinase KinC -
  AAHT66_RS18310 (AAHT66_18310) abrB 3551574..3551852 (-) 279 WP_087992212.1 transcriptional regulator AbhA Regulator
  AAHT66_RS18315 (AAHT66_18315) mreBH 3552137..3553144 (+) 1008 WP_087992213.1 cell shape-determining protein MreBH -
  AAHT66_RS18320 (AAHT66_18320) - 3553246..3553380 (+) 135 WP_087992214.1 protein YkpC -
  AAHT66_RS18325 (AAHT66_18325) - 3553492..3554724 (+) 1233 WP_087992215.1 aminopeptidase -
  AAHT66_RS18330 (AAHT66_18330) - 3554755..3555666 (-) 912 WP_087992216.1 ketopantoate reductase family protein -

Sequence

Protein


Download         Length: 92 a.a.        Molecular weight: 10229.00 Da        Isoelectric Point: 5.1765

>NTDB_id=993375 AAHT66_RS18310 WP_087992212.1 3551574..3551852(-) (abrB) [Bacillus inaquosorum strain XN303]
MKSIGVVRKVDELGRIVMPIELRRALDIAIKDSIEFFVDGDKIILKKYKPHGVCLMTGEITSENTEYGNGKITLSPEGAQ
LLLEEIQAALKE

Nucleotide


Download         Length: 279 bp        

>NTDB_id=993375 AAHT66_RS18310 WP_087992212.1 3551574..3551852(-) (abrB) [Bacillus inaquosorum strain XN303]
ATGAAATCAATAGGTGTTGTGAGAAAAGTAGATGAATTAGGGCGCATTGTCATGCCGATAGAATTAAGACGAGCACTGGA
TATTGCTATAAAAGACAGCATTGAGTTTTTTGTTGACGGAGATAAAATTATCTTGAAAAAGTATAAACCTCATGGCGTTT
GTTTAATGACCGGAGAAATCACTTCAGAAAATACTGAATACGGCAACGGTAAAATTACGTTAAGCCCTGAGGGTGCACAG
CTGCTTCTCGAAGAAATTCAAGCCGCTCTAAAAGAATAA

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(53-88)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(8-51)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

58.242

98.913

0.576

Multiple sequence alignment