Detailed information    

insolico Bioinformatically predicted

Overview

Name   recU   Type   Machinery gene
Locus tag   AAHT66_RS13170 Genome accession   NZ_CP154441
Coordinates   2509747..2510367 (-) Length   206 a.a.
NCBI ID   WP_087990504.1    Uniprot ID   -
Organism   Bacillus inaquosorum strain XN303     
Function   plasmid transformation; homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2504747..2515367
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AAHT66_RS13150 (AAHT66_13150) dnaD 2505041..2505739 (+) 699 WP_087990508.1 DNA replication protein DnaD -
  AAHT66_RS13155 (AAHT66_13155) nth 2505758..2506417 (+) 660 WP_087990507.1 endonuclease III -
  AAHT66_RS13160 (AAHT66_13160) - 2506414..2506908 (+) 495 WP_087990506.1 YpoC family protein -
  AAHT66_RS13165 (AAHT66_13165) - 2506984..2509725 (-) 2742 WP_087990505.1 PBP1A family penicillin-binding protein -
  AAHT66_RS13170 (AAHT66_13170) recU 2509747..2510367 (-) 621 WP_087990504.1 Holliday junction resolvase RecU Machinery gene
  AAHT66_RS13175 (AAHT66_13175) - 2510408..2511370 (+) 963 WP_087990503.1 DUF2515 domain-containing protein -
  AAHT66_RS13180 (AAHT66_13180) sspM 2511395..2511499 (-) 105 WP_003225606.1 acid-soluble spore protein SspM -
  AAHT66_RS13185 (AAHT66_13185) - 2511699..2511944 (+) 246 WP_087990502.1 DUF5446 family protein -
  AAHT66_RS13190 (AAHT66_13190) - 2511990..2512361 (+) 372 WP_087990803.1 YppE family protein -
  AAHT66_RS13195 (AAHT66_13195) - 2512401..2512589 (-) 189 WP_333516531.1 YppF family protein -
  AAHT66_RS13200 (AAHT66_13200) - 2512776..2513144 (+) 369 WP_087990501.1 YppG family protein -
  AAHT66_RS13205 (AAHT66_13205) - 2513165..2513584 (-) 420 WP_087990500.1 Hsp20/alpha crystallin family protein -
  AAHT66_RS13210 (AAHT66_13210) - 2513722..2514228 (+) 507 WP_087990802.1 PTS sugar transporter subunit IIA -

Sequence

Protein


Download         Length: 206 a.a.        Molecular weight: 23880.00 Da        Isoelectric Point: 9.4046

>NTDB_id=993370 AAHT66_RS13170 WP_087990504.1 2509747..2510367(-) (recU) [Bacillus inaquosorum strain XN303]
MIRYPNGKTFQPKHSVSSQNSQKRAPSYSNRGMTLEDDLNETNKYYLTNQIAVIHKKPTPVQIVNVHYPKRSAAVIKEAY
FKQSSTTDYNGIYKGRYIDFEAKETKNKTSFPLQNFHDHQIEHMKQVMAQDGICFVIISAFDQVYFLEADKLLDFWDRKE
KNGRKSIRKDELEEAAYPISLGYAPRIDYISIIEQLYFSPSSSAKG

Nucleotide


Download         Length: 621 bp        

>NTDB_id=993370 AAHT66_RS13170 WP_087990504.1 2509747..2510367(-) (recU) [Bacillus inaquosorum strain XN303]
GTGATTCGGTATCCTAACGGAAAAACGTTTCAGCCGAAACATTCGGTTTCATCCCAAAACAGTCAGAAAAGGGCCCCGTC
CTACAGTAATCGCGGAATGACCCTCGAAGATGACTTAAACGAAACGAATAAGTATTATCTGACAAACCAAATTGCCGTTA
TACACAAAAAGCCGACACCTGTTCAAATTGTAAATGTCCATTATCCAAAAAGAAGCGCCGCGGTGATTAAAGAAGCTTAC
TTTAAACAATCATCGACAACAGATTATAACGGGATTTACAAAGGGCGGTATATTGATTTTGAGGCGAAAGAAACGAAAAA
CAAGACCTCTTTCCCCCTGCAGAATTTTCATGACCATCAAATCGAGCATATGAAGCAGGTAATGGCTCAAGACGGCATTT
GTTTTGTTATTATATCCGCTTTCGACCAGGTTTATTTTTTGGAAGCCGATAAACTGTTGGATTTCTGGGACAGAAAAGAA
AAAAACGGCAGAAAATCAATTCGAAAAGATGAATTAGAGGAAGCGGCTTATCCGATTTCTCTTGGATACGCACCTAGAAT
TGATTATATTAGTATTATTGAACAGCTTTATTTTTCGCCGTCATCTAGTGCGAAAGGTTGA

Domains

Predicted by InterproScan.

Recombination protein U (RecU)

(31-193)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recU Bacillus subtilis subsp. subtilis str. 168

97.573

100

0.976

Multiple sequence alignment