Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   QMG91_RS15670 Genome accession   NZ_AP027049
Coordinates   3448085..3448603 (-) Length   172 a.a.
NCBI ID   WP_004408881.1    Uniprot ID   A0AAV2VQN8
Organism   Vibrio nigripulchritudo strain TUMSAT-V.nig2     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 3443085..3453603
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QMG91_RS15655 (TUMSATVNIG2_30590) - 3444449..3445243 (+) 795 WP_004408885.1 inner membrane protein YpjD -
  QMG91_RS15660 (TUMSATVNIG2_30600) - 3445340..3446602 (+) 1263 WP_004408884.1 HlyC/CorC family transporter -
  QMG91_RS15665 (TUMSATVNIG2_30610) - 3446806..3448035 (+) 1230 WP_281827596.1 YbiU family protein -
  QMG91_RS15670 (TUMSATVNIG2_30620) luxS 3448085..3448603 (-) 519 WP_004408881.1 S-ribosylhomocysteine lyase Regulator
  QMG91_RS15675 (TUMSATVNIG2_30630) - 3448628..3449233 (-) 606 WP_281827598.1 hypothetical protein -
  QMG91_RS15680 (TUMSATVNIG2_30640) gshA 3449239..3450807 (-) 1569 WP_281827599.1 glutamate--cysteine ligase -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 18892.68 Da        Isoelectric Point: 4.5235

>NTDB_id=99336 QMG91_RS15670 WP_004408881.1 3448085..3448603(-) (luxS) [Vibrio nigripulchritudo strain TUMSAT-V.nig2]
MPLLDSFTVDHTKMNAPAVRVAKTMQTPKGDTITVFDLRFTAPNKDILSETGIHTLEHLYAGFMRKHLNGADIEIIDISP
MGCRTGFYMSLIGTPVESQVAEAWLAAMQDVLKVESQDQIPELNEYQCGTAAMHSLDEAKEIATAIIEAGISVNKNEDLA
LPESMLKELSVK

Nucleotide


Download         Length: 519 bp        

>NTDB_id=99336 QMG91_RS15670 WP_004408881.1 3448085..3448603(-) (luxS) [Vibrio nigripulchritudo strain TUMSAT-V.nig2]
ATGCCATTACTAGATAGTTTTACCGTTGATCACACCAAGATGAATGCTCCTGCCGTTCGTGTGGCTAAAACCATGCAAAC
GCCAAAAGGGGACACGATTACCGTTTTTGATCTTCGTTTTACGGCACCTAACAAAGACATTCTGTCTGAGACGGGCATCC
ATACACTTGAGCACCTGTACGCAGGTTTCATGCGTAAACACCTGAATGGCGCTGATATCGAAATTATCGATATATCACCA
ATGGGTTGTCGTACTGGTTTCTACATGAGTCTTATCGGGACACCTGTTGAATCTCAAGTGGCAGAAGCATGGCTTGCAGC
TATGCAAGATGTGTTAAAAGTTGAAAGCCAGGATCAGATCCCAGAGCTGAACGAATACCAGTGCGGTACTGCTGCGATGC
ACTCTCTGGATGAAGCAAAAGAGATTGCAACAGCAATTATCGAAGCAGGAATTTCGGTAAACAAAAATGAAGATCTTGCA
CTACCAGAATCTATGCTGAAAGAGCTGAGCGTGAAGTAA

Domains

Predicted by InterproScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-154)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

86.55

99.419

0.86

Multiple sequence alignment