Detailed information    

insolico Bioinformatically predicted

Overview

Name   recJ   Type   Machinery gene
Locus tag   AAHT66_RS10800 Genome accession   NZ_CP154441
Coordinates   2087037..2089397 (+) Length   786 a.a.
NCBI ID   WP_202327066.1    Uniprot ID   -
Organism   Bacillus inaquosorum strain XN303     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2082037..2094397
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AAHT66_RS10780 (AAHT66_10780) comN 2083356..2083652 (+) 297 WP_087992285.1 post-transcriptional regulator ComN -
  AAHT66_RS10785 (AAHT66_10785) secDF 2083691..2085904 (+) 2214 WP_087992284.1 protein translocase subunit SecDF -
  AAHT66_RS10790 (AAHT66_10790) - 2086064..2086561 (+) 498 WP_087992283.1 cation:proton antiporter regulatory subunit -
  AAHT66_RS10795 (AAHT66_10795) - 2086638..2086970 (+) 333 WP_202327064.1 LapA family protein -
  AAHT66_RS10800 (AAHT66_10800) recJ 2087037..2089397 (+) 2361 WP_202327066.1 single-stranded-DNA-specific exonuclease RecJ Machinery gene
  AAHT66_RS10805 (AAHT66_10805) - 2089403..2089915 (+) 513 WP_087992280.1 adenine phosphoribosyltransferase -
  AAHT66_RS10810 (AAHT66_10810) relA 2090083..2092287 (+) 2205 WP_087992279.1 GTP diphosphokinase -
  AAHT66_RS10815 (AAHT66_10815) dtd 2092300..2092740 (+) 441 WP_087992278.1 D-aminoacyl-tRNA deacylase -
  AAHT66_RS10820 (AAHT66_10820) - 2092766..2094319 (-) 1554 WP_087992277.1 SH3 domain-containing protein -

Sequence

Protein


Download         Length: 786 a.a.        Molecular weight: 88105.68 Da        Isoelectric Point: 5.0404

>NTDB_id=993352 AAHT66_RS10800 WP_202327066.1 2087037..2089397(+) (recJ) [Bacillus inaquosorum strain XN303]
MLASKMRWEIQRPDQNKVKSLTEQLHITPLVASLLVKRGFDTAESARLFLHTKDADFNDPFEMKGMKEAAERIKQAISQQ
EQIMIYGDYDADGVTSTSVMLHTLQKLSAQVDFYIPDRFKEGYGPNEQAFRSIKERGFSLIITVDTGIAAVHEAKVAKEL
GLDVIITDHHEPGPELPDVYAIVHPKQPGCTYPFKELAGVGVAFKLAHALLGELPDELLDLAAIGTIADLVPLHDENRLI
ATLGLERLRRTNRLGLKELIKLSGGDIGEANEETVGFQLAPRLNAVGRIEQADPAVHLLMTEDSFEAGELAAEIDQLNKE
RQKMVSKMTDEAIEMVEQQSLDQTAIVVAKAGWNPGVVGIVASKLVDRFYRPAIVLGIDEEKGIAKGSARSIRGFNLFES
LSECRDILPHFGGHPMAAGMTLNAEDVPDLRNRLNQIADNTLTEEDFIPVQEVDLVCGVEDITVDSITEMNLLSPFGMLN
PKPHVLVENAVLEDVRKIGANKNHVKMTVRNESSQLDCVGFNKGELEEGIVRGSRISIVGEMSINEWNNRKKPQLMIKDA
AVSEWQLFDLRGKRMWEDTVSALPSAKRAIVSFKEDSTTLLQTEDLRREVHVISSEDQAKALDLDGAYIVLLDPPPSLDM
LAHLLEGKMPERIYFIFLNQEDHFLSAFPARDHFKWYYGFLLKRGSFDVKQHGSELARHKGWSVETINFMTKVFFDLGFV
KIENGVLSVISGVKKRDLTDSQTYQAKKQLMELDQKLNYSSAEELKEWLNKLMKQDSEAYESTRRT

Nucleotide


Download         Length: 2361 bp        

>NTDB_id=993352 AAHT66_RS10800 WP_202327066.1 2087037..2089397(+) (recJ) [Bacillus inaquosorum strain XN303]
ATGTTAGCGTCAAAAATGCGATGGGAAATCCAGCGACCAGATCAGAATAAGGTCAAATCACTCACAGAACAATTGCATAT
AACACCTCTTGTTGCGTCCCTGCTTGTAAAAAGAGGCTTTGATACAGCAGAAAGCGCAAGGCTGTTTTTACATACAAAGG
ATGCCGATTTTAATGATCCTTTTGAAATGAAGGGCATGAAAGAAGCGGCAGAGCGAATAAAACAGGCGATATCACAACAA
GAACAGATTATGATATATGGCGATTATGATGCCGATGGAGTTACCAGTACGTCAGTGATGCTGCACACACTGCAAAAGCT
GTCGGCTCAAGTTGATTTTTATATACCTGACCGCTTTAAAGAAGGCTACGGCCCTAATGAACAGGCATTTCGTTCGATTA
AGGAACGGGGCTTCTCTCTGATTATTACGGTTGATACAGGAATTGCCGCTGTACATGAAGCAAAGGTGGCAAAGGAACTC
GGACTGGATGTCATCATTACAGATCACCATGAGCCGGGACCGGAACTTCCGGATGTTTACGCGATCGTCCACCCGAAGCA
GCCGGGCTGCACCTACCCGTTTAAAGAACTGGCCGGAGTCGGAGTCGCGTTTAAGCTTGCCCACGCTTTATTGGGCGAAC
TCCCAGATGAATTGCTTGACCTGGCGGCAATCGGCACCATTGCCGATCTAGTCCCGTTGCATGACGAAAACAGATTAATT
GCAACACTGGGACTTGAAAGGCTTCGTCGGACGAATCGGCTGGGCTTAAAAGAGCTGATCAAGCTGTCAGGCGGAGACAT
CGGAGAAGCGAACGAAGAAACAGTCGGGTTCCAGCTTGCACCAAGGCTGAATGCCGTCGGAAGAATTGAACAGGCGGATC
CCGCTGTTCATTTGCTCATGACAGAGGATTCGTTTGAAGCGGGAGAGCTTGCCGCTGAAATTGACCAGCTGAACAAAGAG
CGCCAAAAGATGGTCAGTAAAATGACGGATGAAGCGATTGAAATGGTTGAACAGCAAAGCCTCGATCAAACTGCAATCGT
CGTGGCCAAAGCCGGATGGAATCCAGGAGTCGTCGGAATTGTGGCTTCAAAGCTTGTGGACCGTTTCTACCGCCCGGCCA
TTGTGCTTGGCATTGATGAAGAAAAAGGGATCGCTAAAGGTTCGGCCCGGAGCATCAGGGGTTTTAATTTATTCGAAAGC
CTTTCTGAATGCAGAGATATTCTTCCTCATTTCGGCGGCCATCCAATGGCGGCGGGGATGACGCTGAATGCCGAAGATGT
GCCGGATTTGCGAAACAGGCTGAATCAAATAGCGGACAATACGCTTACGGAAGAGGATTTTATTCCTGTACAGGAAGTCG
ATCTCGTCTGCGGTGTCGAGGACATTACGGTTGATAGCATTACAGAAATGAACCTGCTGTCCCCCTTTGGCATGCTAAAC
CCGAAACCGCACGTTCTCGTAGAAAACGCTGTGCTGGAAGATGTCCGGAAGATTGGAGCAAATAAAAATCATGTCAAAAT
GACGGTCAGAAACGAGTCATCTCAGCTTGATTGCGTCGGTTTTAATAAAGGTGAGCTTGAAGAAGGCATCGTCCGCGGCT
CAAGAATTTCAATTGTCGGTGAGATGTCTATCAACGAATGGAACAATAGAAAAAAACCGCAGCTTATGATTAAGGATGCC
GCTGTTTCTGAATGGCAGCTGTTTGATTTAAGGGGGAAACGGATGTGGGAAGACACAGTTTCTGCCCTTCCATCTGCTAA
ACGGGCCATTGTCTCTTTCAAAGAAGACTCAACAACACTTCTTCAGACTGAAGATCTTCGCCGTGAAGTGCACGTCATCA
GTTCTGAAGATCAGGCGAAGGCGTTAGATCTCGATGGTGCTTATATTGTATTACTGGATCCGCCGCCTTCGTTGGACATG
CTCGCACATTTGCTGGAAGGCAAGATGCCTGAGCGGATATATTTTATTTTTCTTAATCAAGAGGATCACTTTTTATCAGC
TTTTCCAGCAAGAGACCACTTTAAATGGTATTATGGGTTTCTTCTGAAAAGAGGTTCTTTTGACGTGAAACAACACGGCT
CAGAGCTTGCGAGACATAAGGGCTGGTCCGTTGAAACAATCAATTTCATGACAAAGGTGTTTTTTGATCTCGGTTTTGTT
AAAATAGAGAATGGTGTGCTGTCTGTGATTAGCGGAGTCAAGAAACGCGACTTAACAGACTCACAAACCTATCAGGCGAA
GAAGCAGCTGATGGAATTGGATCAAAAGCTGAATTATTCTTCTGCTGAAGAGCTGAAGGAATGGCTGAATAAGCTGATGA
AACAAGATTCAGAGGCTTATGAAAGTACGAGGAGGACATAA

Domains

Predicted by InterproScan.

DHH family (DHH)

(82-226)

DHHA1 domain (DHHA1)

(315-437)

RecJ OB domain (RecJ_OB)

(453-559)

Single-strand DNA-specific exonuclease, C terminal domain (ssDNA-exonuc_C)

(566-769)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recJ Bacillus subtilis subsp. subtilis str. 168

95.929

100

0.959

Multiple sequence alignment