Detailed information    

insolico Bioinformatically predicted

Overview

Name   comC   Type   Machinery gene
Locus tag   AAHT66_RS10565 Genome accession   NZ_CP154441
Coordinates   2047532..2048278 (+) Length   248 a.a.
NCBI ID   WP_333516654.1    Uniprot ID   -
Organism   Bacillus inaquosorum strain XN303     
Function   processing and translocation of ComGC; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2042532..2053278
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AAHT66_RS10550 (AAHT66_10550) - 2042762..2042953 (-) 192 WP_087992323.1 hypothetical protein -
  AAHT66_RS10555 (AAHT66_10555) valS 2043402..2046044 (+) 2643 WP_333516656.1 valine--tRNA ligase -
  AAHT66_RS10560 (AAHT66_10560) - 2046104..2047396 (+) 1293 WP_333516655.1 bifunctional folylpolyglutamate synthase/dihydrofolate synthase -
  AAHT66_RS10565 (AAHT66_10565) comC 2047532..2048278 (+) 747 WP_333516654.1 prepilin peptidase Machinery gene
  AAHT66_RS10570 (AAHT66_10570) - 2048412..2049410 (+) 999 WP_202327048.1 SPOR domain-containing protein -
  AAHT66_RS10575 (AAHT66_10575) - 2049562..2050131 (+) 570 WP_087992318.1 Maf family nucleotide pyrophosphatase -
  AAHT66_RS10580 (AAHT66_10580) radC 2050168..2050863 (+) 696 WP_087992317.1 RadC family protein -
  AAHT66_RS10585 (AAHT66_10585) mreB 2050955..2051968 (+) 1014 WP_087992316.1 cell shape-determining protein MreB -
  AAHT66_RS10590 (AAHT66_10590) mreC 2051999..2052871 (+) 873 WP_087992315.1 rod shape-determining protein MreC -

Sequence

Protein


Download         Length: 248 a.a.        Molecular weight: 26355.97 Da        Isoelectric Point: 9.9321

>NTDB_id=993350 AAHT66_RS10565 WP_333516654.1 2047532..2048278(+) (comC) [Bacillus inaquosorum strain XN303]
MLPILFILGLILGSFYYTAGCRIPLRISIVKPRSACSFCRRTLTPAELIPILSFLFQKGKCKSCGHRISFMYPAAELVTA
CLFAAAGIRFGPSPELFPAVVFTSLLIIVAVTDIHFMLIPNRILIFFLPFLAAARLISPLDSWYAGLLGAAAGFLFLVLI
ALLTHGGIGGGDIKLFAVIGFVLGVKVLAAAFFFSILIGAVYGAAAVLTGRLAKGQPLPFAPAIAAGSILAYLYGDSIIS
FYMKVALG

Nucleotide


Download         Length: 747 bp        

>NTDB_id=993350 AAHT66_RS10565 WP_333516654.1 2047532..2048278(+) (comC) [Bacillus inaquosorum strain XN303]
ATGCTTCCCATTCTATTTATCCTCGGGCTGATCCTTGGCTCGTTTTATTATACGGCCGGGTGCCGTATCCCCTTGCGTAT
ATCTATTGTCAAGCCTCGTTCGGCATGCTCGTTTTGCCGGCGGACATTAACTCCCGCAGAACTAATTCCCATCCTGTCAT
TCCTTTTCCAAAAAGGCAAATGTAAAAGCTGCGGGCATAGGATTTCTTTTATGTACCCCGCGGCAGAGCTTGTGACAGCG
TGTTTATTTGCCGCTGCAGGAATACGCTTTGGCCCGTCTCCGGAGCTGTTTCCCGCTGTTGTGTTTACCTCTCTTCTTAT
CATTGTTGCAGTGACAGATATTCATTTTATGCTGATTCCAAATCGAATATTGATTTTCTTTCTCCCCTTTTTAGCGGCAG
CCAGATTGATTTCTCCGCTTGATTCCTGGTATGCCGGCCTGTTAGGTGCGGCAGCCGGATTTCTTTTCCTGGTCTTAATT
GCCTTACTCACCCATGGGGGAATAGGGGGAGGAGATATTAAATTATTTGCGGTGATTGGCTTCGTGCTTGGTGTGAAAGT
GCTGGCAGCTGCCTTTTTCTTTTCTATTTTGATAGGTGCAGTGTATGGAGCGGCAGCCGTCCTGACTGGAAGACTCGCCA
AAGGGCAGCCGCTTCCCTTTGCCCCCGCAATTGCGGCAGGGAGCATTTTAGCCTATTTATACGGCGACTCTATTATTTCT
TTTTATATGAAGGTGGCATTGGGCTGA

Domains

Predicted by InterproScan.

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(7-90)

Type IV leader peptidase family (Peptidase_A24)

(101-203)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comC Bacillus subtilis subsp. subtilis str. 168

91.129

100

0.911

Multiple sequence alignment