Detailed information    

insolico Bioinformatically predicted

Overview

Name   recF   Type   Machinery gene
Locus tag   AAHT66_RS03620 Genome accession   NZ_CP154441
Coordinates   677275..678387 (-) Length   370 a.a.
NCBI ID   WP_202327737.1    Uniprot ID   -
Organism   Bacillus inaquosorum strain XN303     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 672275..683387
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AAHT66_RS03605 (AAHT66_03605) gyrA 672365..674830 (-) 2466 WP_087993740.1 DNA topoisomerase (ATP-hydrolyzing) subunit A -
  AAHT66_RS03610 (AAHT66_03610) gyrB 675041..676957 (-) 1917 WP_148963437.1 DNA topoisomerase (ATP-hydrolyzing) subunit B -
  AAHT66_RS03615 (AAHT66_03615) remB 677012..677257 (-) 246 WP_003219266.1 extracellular matrix regulator RemB -
  AAHT66_RS03620 (AAHT66_03620) recF 677275..678387 (-) 1113 WP_202327737.1 DNA replication/repair protein RecF Machinery gene
  AAHT66_RS03625 (AAHT66_03625) rlbA 678403..678618 (-) 216 WP_003219264.1 ribosome maturation protein RlbA -
  AAHT66_RS03630 (AAHT66_03630) dnaN 678749..679885 (-) 1137 WP_202327738.1 DNA polymerase III subunit beta -
  AAHT66_RS03635 (AAHT66_03635) dnaA 680076..681416 (-) 1341 WP_039074864.1 chromosomal replication initiator protein DnaA -
  AAHT66_RS03640 (AAHT66_03640) rpmH 682038..682172 (+) 135 WP_003178075.1 50S ribosomal protein L34 -
  AAHT66_RS03645 (AAHT66_03645) rnpA 682325..682675 (+) 351 WP_003242628.1 ribonuclease P protein component -

Sequence

Protein


Download         Length: 370 a.a.        Molecular weight: 42329.35 Da        Isoelectric Point: 7.6873

>NTDB_id=993329 AAHT66_RS03620 WP_202327737.1 677275..678387(-) (recF) [Bacillus inaquosorum strain XN303]
MYIQNLELTSYRNYDHAELQFENKVNVIIGENAQGKTNLMEAIYVLSMAKSHRTSNDKELIRWDKDYAKIEGRVMKQNGA
IPMQLVISKKGKKGKVNHIEQQKLSQYVGALNTIMFAPEDLNLVKGSPQVRRRFLDMEIGQVSPVYLHDLSLYQKILSQR
NHFLKQLQTRKQTDRTMLDVLTDQLVEVASKVVVKRLQFTAQLEKWAQPIHTGISRGLEELTLKYSTALEVSDPKDLSKI
GDSYQEAFSKLREKEIERGVTLSGPHRDDVLFYVNGRDVQTYGSQGQQRTTALSLKLAEIDLIHEEIGEYPILLLDDVLS
ELDDYRQSHLLHTIQGRVQTFVTTTSVDGIDHETLRQAGMFRVQNGALVK

Nucleotide


Download         Length: 1113 bp        

>NTDB_id=993329 AAHT66_RS03620 WP_202327737.1 677275..678387(-) (recF) [Bacillus inaquosorum strain XN303]
TTGTATATCCAGAACTTAGAACTGACATCTTACCGCAACTACGACCATGCTGAACTCCAATTTGAAAACAAAGTAAATGT
CATCATCGGAGAAAACGCCCAGGGGAAAACAAACCTCATGGAGGCGATCTATGTCTTGTCCATGGCGAAATCGCACCGGA
CATCAAATGACAAAGAACTTATACGGTGGGACAAAGACTATGCTAAAATAGAGGGAAGAGTGATGAAGCAAAACGGAGCG
ATCCCGATGCAGCTCGTCATCTCCAAAAAGGGTAAAAAGGGCAAGGTCAACCATATTGAACAGCAAAAGCTCAGCCAGTA
TGTCGGGGCCCTCAACACCATCATGTTCGCGCCGGAAGATTTAAATCTGGTAAAGGGGAGCCCTCAAGTGAGAAGGCGGT
TTCTTGACATGGAAATTGGACAGGTTTCTCCTGTCTACCTGCATGATCTTTCTCTTTACCAGAAAATCCTTTCCCAGCGA
AATCATTTTTTGAAGCAGCTGCAAACAAGAAAACAAACTGACAGAACGATGCTCGATGTTTTGACCGATCAGCTTGTAGA
AGTTGCGTCAAAAGTCGTTGTAAAACGCCTGCAGTTTACAGCGCAGCTTGAAAAATGGGCGCAGCCTATTCATACGGGCA
TATCAAGAGGGCTTGAGGAGCTGACCCTGAAGTACAGTACGGCTCTTGAGGTATCAGATCCTAAAGACTTGTCGAAAATA
GGAGATAGCTATCAAGAAGCGTTTTCTAAATTAAGAGAAAAAGAAATTGAGCGCGGTGTTACGCTGTCAGGTCCTCATCG
TGACGATGTTCTTTTCTATGTGAACGGACGCGATGTGCAGACGTATGGTTCACAAGGACAGCAGCGAACGACGGCATTGT
CCCTTAAACTTGCGGAGATTGACCTGATCCATGAGGAAATCGGAGAATATCCCATTTTACTATTGGATGATGTATTGAGT
GAGCTGGATGATTATCGCCAGTCACACTTGCTTCATACGATCCAAGGCCGTGTACAAACGTTTGTCACAACGACAAGCGT
TGATGGCATTGATCACGAAACCTTACGTCAAGCAGGAATGTTCCGTGTGCAAAACGGTGCGTTAGTGAAGTGA

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(2-350)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recF Bacillus subtilis subsp. subtilis str. 168

98.649

100

0.986

Multiple sequence alignment