Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   AAHT66_RS03395 Genome accession   NZ_CP154441
Coordinates   636548..636832 (+) Length   94 a.a.
NCBI ID   WP_087993958.1    Uniprot ID   -
Organism   Bacillus inaquosorum strain XN303     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 631548..641832
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AAHT66_RS03380 (AAHT66_03380) - 631738..633051 (-) 1314 WP_087991883.1 ubiquitin-like domain-containing protein -
  AAHT66_RS03385 (AAHT66_03385) - 633207..633974 (-) 768 WP_087991884.1 TatD family hydrolase -
  AAHT66_RS03390 (AAHT66_03390) metG 634053..636047 (-) 1995 WP_202329173.1 methionine--tRNA ligase -
  AAHT66_RS03395 (AAHT66_03395) abrB 636548..636832 (+) 285 WP_087993958.1 transition state genes transcriptional regulator AbrB Regulator
  AAHT66_RS03400 (AAHT66_03400) rsmI 636879..637757 (-) 879 WP_087993957.1 16S rRNA (cytidine(1402)-2'-O)-methyltransferase -
  AAHT66_RS03405 (AAHT66_03405) - 637732..638031 (-) 300 WP_087993956.1 GIY-YIG nuclease family protein -
  AAHT66_RS03410 (AAHT66_03410) - 638018..638761 (-) 744 WP_087993955.1 tRNA1(Val) (adenine(37)-N6)-methyltransferase -
  AAHT66_RS03415 (AAHT66_03415) yabA 638820..639179 (-) 360 WP_087993954.1 replication initiation-control protein YabA -
  AAHT66_RS03420 (AAHT66_03420) ricT 639194..640021 (-) 828 WP_060397760.1 competence/sporulation regulator complex protein RicT -
  AAHT66_RS03425 (AAHT66_03425) holB 640024..641013 (-) 990 WP_087993953.1 DNA polymerase III subunit delta' -
  AAHT66_RS03430 (AAHT66_03430) - 641025..641465 (-) 441 WP_087993952.1 YaaR family protein -
  AAHT66_RS03435 (AAHT66_03435) darA 641478..641807 (-) 330 WP_148964448.1 cyclic di-AMP receptor DarA -

Sequence

Protein


Download         Length: 94 a.a.        Molecular weight: 10523.25 Da        Isoelectric Point: 6.3482

>NTDB_id=993327 AAHT66_RS03395 WP_087993958.1 636548..636832(+) (abrB) [Bacillus inaquosorum strain XN303]
MKSTGIVRKVDELGRVVIPIELRRTLGIAEKDALEIYVDDEKIILKKYKPNMTCQVTGEVSDDNLKLAGGKLVLSQEGAE
QIISEIQKQLQNQK

Nucleotide


Download         Length: 285 bp        

>NTDB_id=993327 AAHT66_RS03395 WP_087993958.1 636548..636832(+) (abrB) [Bacillus inaquosorum strain XN303]
ATGAAATCTACTGGTATTGTGCGTAAAGTTGATGAATTAGGACGTGTAGTTATTCCTATCGAATTGCGTCGTACTCTTGG
AATCGCAGAAAAAGATGCTCTTGAAATTTATGTTGATGATGAAAAAATCATCCTTAAAAAATATAAACCAAACATGACTT
GCCAAGTAACTGGTGAAGTTTCTGATGATAACCTTAAACTTGCTGGCGGTAAATTGGTTCTTAGCCAAGAAGGCGCTGAG
CAAATCATCAGCGAAATCCAAAAGCAGCTTCAAAACCAAAAATAA

Domains

Predicted by InterproScan.

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(8-50)

AbrB C-terminal domain (AbrB_C)

(53-88)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

96.809

100

0.968

Multiple sequence alignment