Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   AAIA71_RS08215 Genome accession   NZ_CP154266
Coordinates   1687333..1688754 (-) Length   473 a.a.
NCBI ID   WP_005445536.1    Uniprot ID   A0A9X3ML51
Organism   Vibrio harveyi strain N8T11     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1682333..1693754
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AAIA71_RS08190 (AAIA71_08190) - 1683027..1683677 (+) 651 WP_274791751.1 thiopurine S-methyltransferase -
  AAIA71_RS08195 (AAIA71_08195) purT 1683754..1684929 (-) 1176 WP_343289893.1 formate-dependent phosphoribosylglycinamide formyltransferase -
  AAIA71_RS08200 (AAIA71_08200) cdd 1685078..1685965 (-) 888 WP_005445539.1 cytidine deaminase -
  AAIA71_RS08205 (AAIA71_08205) - 1686221..1686898 (-) 678 WP_005445538.1 LrgB family protein -
  AAIA71_RS08210 (AAIA71_08210) - 1686900..1687274 (-) 375 WP_274791752.1 CidA/LrgA family protein -
  AAIA71_RS08215 (AAIA71_08215) sbcB 1687333..1688754 (-) 1422 WP_005445536.1 exodeoxyribonuclease I Machinery gene
  AAIA71_RS08220 (AAIA71_08220) - 1688916..1689596 (-) 681 WP_005445535.1 DUF1826 domain-containing protein -
  AAIA71_RS08225 (AAIA71_08225) - 1689818..1691191 (-) 1374 WP_274791753.1 L-cystine transporter -
  AAIA71_RS08230 (AAIA71_08230) - 1691386..1692081 (-) 696 WP_005445533.1 NAD(P)H-binding protein -
  AAIA71_RS08235 (AAIA71_08235) - 1692817..1693428 (+) 612 WP_274791754.1 flavin reductase family protein -

Sequence

Protein


Download         Length: 473 a.a.        Molecular weight: 54569.91 Da        Isoelectric Point: 4.9808

>NTDB_id=992842 AAIA71_RS08215 WP_005445536.1 1687333..1688754(-) (sbcB) [Vibrio harveyi strain N8T11]
MHQDNQPTFFFFDYETWGTSPAKDRPSQFAGVRTDENFNIIGEPLVMYCRPPADYLPSPEAALITGITPQKAMQEGLPEP
EFIAKIHAELSKPKTTSLGYNSIRFDDEVTRYTCYRNFIDPYAWSWQNGNSRWDLLDVMRACHALRPEGVEWPENDEGFT
SFKLEHLSVANGIEHSNAHDAMADVIATIEMAKKVKAAQPKLFDYFFSMRNKRKLNELVDIVNMTPLMHVSGMLGRECQY
TSWIVPVAWHPTNNNAVITIDLAKDPQPILELSAEELKERLYTKRDELGDLLPVPVKLVHLNKCPILAPAKTLTAENAEV
IGIDRQQCLNNLALLRQHPEIREKLISLFSIEREFEKSNDVDTQLYDGFFSPADRAAMDIIRETDPNNLAALDIEFDDKR
IKPLLFRYRARHYAGTLDEQEQRRWAQHCREVFESQIEEYMMNLENLVHEHESDEKKIAILKSVYRYVESLAS

Nucleotide


Download         Length: 1422 bp        

>NTDB_id=992842 AAIA71_RS08215 WP_005445536.1 1687333..1688754(-) (sbcB) [Vibrio harveyi strain N8T11]
ATGCACCAAGACAATCAGCCCACTTTTTTCTTTTTTGATTACGAGACTTGGGGAACAAGTCCAGCCAAAGATCGTCCAAG
CCAGTTCGCAGGCGTTCGCACTGATGAAAACTTCAATATCATCGGTGAACCTTTGGTCATGTACTGTCGCCCACCTGCTG
ATTACCTTCCTTCGCCAGAAGCAGCTTTGATCACTGGTATTACACCACAAAAAGCAATGCAAGAAGGCTTACCTGAACCT
GAGTTTATCGCCAAAATTCATGCTGAATTGTCTAAACCAAAGACGACTAGCCTTGGCTACAACAGCATACGTTTTGATGA
TGAAGTCACTCGTTACACTTGCTACCGAAACTTCATCGATCCATACGCATGGAGCTGGCAAAACGGCAACTCACGATGGG
ATTTGCTTGACGTGATGCGAGCATGTCATGCCCTGCGTCCTGAAGGCGTAGAATGGCCAGAGAACGATGAAGGCTTTACA
AGCTTCAAGCTAGAGCATTTATCCGTAGCGAATGGCATTGAACACAGCAATGCTCACGATGCGATGGCCGACGTGATTGC
CACGATTGAAATGGCGAAGAAAGTTAAAGCCGCCCAACCTAAGCTATTTGACTACTTTTTCTCGATGCGTAACAAGCGCA
AACTCAATGAGCTGGTTGATATTGTCAATATGACTCCGTTGATGCATGTATCAGGCATGCTTGGGCGTGAATGCCAATAC
ACAAGCTGGATTGTGCCTGTGGCTTGGCACCCAACCAACAACAACGCTGTTATCACGATTGATTTAGCCAAAGATCCTCA
GCCGATCCTTGAACTTTCAGCGGAAGAACTGAAAGAACGCTTGTACACCAAGCGTGACGAATTGGGCGACTTACTGCCTG
TACCAGTGAAGCTGGTGCATCTGAACAAGTGCCCTATTCTCGCTCCAGCAAAAACATTAACCGCGGAAAATGCGGAAGTC
ATTGGTATTGACCGCCAACAATGTTTAAACAATTTAGCGTTGTTGCGCCAACACCCAGAGATCCGAGAGAAGCTGATTAG
TCTATTCTCTATAGAACGTGAATTCGAAAAGAGTAATGACGTTGATACGCAGCTTTACGATGGCTTTTTCTCGCCTGCTG
ATCGCGCTGCTATGGACATCATTCGTGAAACCGATCCGAATAACTTAGCCGCACTGGACATTGAATTCGATGATAAACGA
ATCAAGCCATTGCTTTTCCGTTACCGTGCTCGCCATTATGCAGGCACATTAGATGAACAAGAACAAAGACGCTGGGCACA
ACATTGTCGTGAAGTTTTCGAAAGTCAGATTGAAGAGTACATGATGAATTTAGAAAACTTAGTTCACGAACATGAAAGTG
ACGAAAAGAAGATAGCAATATTAAAATCCGTCTATCGTTATGTAGAGAGCCTAGCCTCCTAA

Domains

Predicted by InterproScan.

Exonuclease C-terminal (Exonuc_X-T_C)

(210-469)

Exonuclease (RNase_T)

(11-190)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

79.281

100

0.793

Multiple sequence alignment