Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   ACKTSO_RS09205 Genome accession   NZ_AP035889
Coordinates   1887794..1888300 (+) Length   168 a.a.
NCBI ID   WP_039163458.1    Uniprot ID   -
Organism   Gallibacterium anatis strain SMUHGa01     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1882794..1893300
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACKTSO_RS09175 (SMUG_18020) trmA 1882823..1883923 (+) 1101 WP_407902390.1 tRNA (uridine(54)-C5)-methyltransferase TrmA -
  ACKTSO_RS09180 (SMUG_18030) - 1883923..1884687 (+) 765 WP_407902391.1 class I SAM-dependent methyltransferase -
  ACKTSO_RS09185 (SMUG_18040) - 1884653..1885351 (-) 699 WP_039088803.1 7-cyano-7-deazaguanine/7-aminomethyl-7- deazaguanine transporter -
  ACKTSO_RS09190 (SMUG_18050) - 1885496..1886044 (+) 549 WP_039093074.1 DJ-1 family glyoxalase III -
  ACKTSO_RS09195 (SMUG_18060) - 1886058..1887002 (+) 945 WP_407902392.1 NADP-dependent oxidoreductase -
  ACKTSO_RS09200 (SMUG_18070) - 1887006..1887611 (+) 606 Protein_1792 sugar O-acetyltransferase -
  ACKTSO_RS09205 (SMUG_18080) luxS 1887794..1888300 (+) 507 WP_039163458.1 S-ribosylhomocysteine lyase Regulator
  ACKTSO_RS09210 (SMUG_18090) purT 1888367..1889548 (+) 1182 WP_407902393.1 formate-dependent phosphoribosylglycinamide formyltransferase -
  ACKTSO_RS09215 (SMUG_18100) - 1889604..1890302 (-) 699 WP_407902394.1 fumarylacetoacetate hydrolase family protein -
  ACKTSO_RS09220 (SMUG_18110) - 1890504..1891454 (+) 951 WP_039093064.1 tripartite tricarboxylate transporter substrate binding protein -
  ACKTSO_RS09225 (SMUG_18120) - 1891496..1891942 (+) 447 WP_407902395.1 tripartite tricarboxylate transporter TctB family protein -

Sequence

Protein


Download         Length: 168 a.a.        Molecular weight: 18645.30 Da        Isoelectric Point: 5.9074

>NTDB_id=99284 ACKTSO_RS09205 WP_039163458.1 1887794..1888300(+) (luxS) [Gallibacterium anatis strain SMUHGa01]
MPLLDSFKVDHVKMNAPAVRVAKTMQTPKGDKITVFDLRFCKPNQDNISPKGIHTLEHLFAGFMRDHLNSDSVEIIDISP
MGCRTGFYMSLIGTPAEQQVAAAWEKAMQDVLSVKSEKEIPELNQYQCGTYTEHSLADAQAAAKKVLAQGIGINHNQDLL
LDDSFLNQ

Nucleotide


Download         Length: 507 bp        

>NTDB_id=99284 ACKTSO_RS09205 WP_039163458.1 1887794..1888300(+) (luxS) [Gallibacterium anatis strain SMUHGa01]
ATGCCATTATTAGACAGTTTTAAGGTTGACCACGTTAAAATGAATGCCCCTGCGGTGCGTGTTGCAAAGACAATGCAAAC
GCCTAAAGGCGATAAAATTACAGTTTTTGATCTTCGTTTTTGCAAACCGAATCAAGACAATATCAGTCCGAAAGGTATTC
ACACTTTGGAACATCTTTTCGCCGGTTTTATGCGTGATCATCTCAATAGTGACAGCGTTGAAATTATTGATATTTCACCA
ATGGGTTGCCGCACCGGGTTTTATATGAGTTTAATCGGTACGCCTGCGGAACAACAGGTTGCGGCGGCGTGGGAAAAAGC
AATGCAGGATGTATTGTCGGTGAAAAGCGAAAAAGAGATCCCGGAATTAAACCAATATCAATGCGGAACATACACGGAAC
ATTCATTAGCGGATGCTCAAGCAGCAGCGAAAAAGGTGCTTGCTCAGGGAATCGGCATTAATCACAATCAAGATTTATTA
CTTGATGACAGCTTTTTAAATCAATAG

Domains

Predicted by InterProScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-152)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

72.024

100

0.72

Multiple sequence alignment