Detailed information NTG0992831

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: AAIA71_RS03255
• Genome accession: NZ_CP154266
• Coordinates: 655260..656243 (+)
• Length: 327 a.a.
• NCBI ID: WP_005452115.1
• Uniprot ID: A0A812FCY7
• Organism: Vibrio harveyi strain N8T11
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 650260..661243

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
AAIA71_RS03220 (AAIA71_03220)	ftsB	650266..650547 (+)	282	WP_005452106.1	cell division protein FtsB	-
AAIA71_RS03225 (AAIA71_03225)	ispD	650549..651259 (+)	711	WP_038899663.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
AAIA71_RS03230 (AAIA71_03230)	ispF	651274..651750 (+)	477	WP_009698769.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
AAIA71_RS03235 (AAIA71_03235)	truD	651796..652839 (+)	1044	WP_050902432.1	tRNA pseudouridine(13) synthase TruD	-
AAIA71_RS03240 (AAIA71_03240)	surE	652839..653615 (+)	777	WP_009698768.1	5'/3'-nucleotidase SurE	-
AAIA71_RS03245 (AAIA71_03245)	-	653615..654241 (+)	627	WP_005452113.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
AAIA71_RS03250 (AAIA71_03250)	-	654256..655179 (+)	924	WP_009698767.1	peptidoglycan DD-metalloendopeptidase family protein	-
AAIA71_RS03255 (AAIA71_03255)	rpoS	655260..656243 (+)	984	WP_005452115.1	RNA polymerase sigma factor RpoS	Regulator
AAIA71_RS03260 (AAIA71_03260)	mutS	656337..658922 (-)	2586	WP_274792435.1	DNA mismatch repair protein MutS	-
AAIA71_RS03265 (AAIA71_03265)	-	659095..660435 (+)	1341	WP_140272598.1	site-specific integrase	-

Sequence

Protein

• Length: 327 a.a.
• Molecular weight: 37236.10 Da
• Isoelectric Point: 4.7232

>NTDB_id=992831 AAIA71_RS03255 WP_005452115.1 655260..656243(+) (rpoS) [Vibrio harveyi strain N8T11]
MSISNTVTKVEEFEYDNAQSEGISNGLEKPSNGTKTAAREEFDASSKSLDATQLYLGEIGFSPLLTAEEEVLYARRALRG
DEAARKRMIESNLRLVVKISRRYSNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERALMNQTRTIR
LPIHVVKELNIYLRTARELSQKLDHEPTAEEIAAQLDIPVEDVSKMLRLNERISSVDTPIGGDGEKALLDIIPDANNSDP
EVSTQDDDIKSSLIHWLEELNPKQKEVLARRFGLLGYEPSTLEEVGREIGLTRERVRQIQVEGLRRLREILIKQGLNMEN
LFNVEDD

Nucleotide

• Length: 984 bp

>NTDB_id=992831 AAIA71_RS03255 WP_005452115.1 655260..656243(+) (rpoS) [Vibrio harveyi strain N8T11]
ATGAGTATCAGCAACACAGTAACCAAAGTTGAAGAGTTCGAATATGATAATGCACAATCGGAAGGCATTTCTAACGGACT
TGAAAAACCATCTAACGGAACCAAAACAGCAGCACGCGAAGAGTTTGATGCGAGCAGCAAGAGCCTAGACGCGACTCAGC
TTTACCTAGGTGAAATTGGTTTCTCACCTCTACTTACTGCAGAAGAAGAAGTACTTTATGCACGACGTGCACTGCGTGGC
GATGAAGCCGCTCGCAAACGCATGATCGAAAGTAACTTGCGTCTTGTAGTGAAGATCTCTCGCCGATACAGCAATCGTGG
TCTTGCGCTTCTTGATCTTATTGAAGAAGGTAACCTAGGTTTGATCCGTGCGGTCGAGAAGTTTGATCCAGAACGAGGCT
TCCGTTTCTCAACTTACGCGACGTGGTGGATTCGCCAAACGATCGAACGTGCGTTGATGAACCAAACTCGTACAATCCGT
CTGCCAATTCATGTGGTTAAAGAGCTGAACATTTATCTGCGTACAGCGCGTGAACTTTCTCAGAAGCTCGACCATGAACC
AACAGCAGAAGAGATTGCTGCACAGTTAGATATCCCAGTAGAAGACGTAAGTAAAATGCTTCGCCTTAACGAGCGTATTA
GCTCTGTCGATACTCCAATCGGTGGTGACGGCGAGAAAGCGTTACTGGATATTATTCCTGATGCAAACAACTCGGATCCT
GAAGTTTCCACTCAAGACGATGACATCAAATCTTCATTGATCCATTGGCTAGAAGAGCTGAATCCAAAACAGAAAGAAGT
GCTGGCACGTCGTTTTGGTCTGCTTGGTTATGAGCCATCAACGCTTGAAGAAGTGGGACGTGAAATTGGTTTAACACGCG
AACGTGTTCGCCAGATCCAAGTGGAAGGCTTACGTCGACTACGCGAGATCTTGATTAAACAAGGTCTGAACATGGAAAAC
TTGTTCAACGTAGAAGACGACTAA

Domains

Predicted by InterproScan.

• Sigma-70 region 3 (Sigma70_r3) (168-241)

• Sigma-70, region 4 (Sigma70_r4) (256-309)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (50-83)

• Sigma-70 region 2 (Sigma70_r2) (88-157)

3D structure

• AlphaFold DB: A0A812FCY7

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	83.832	100	0.856