Detailed information    

insolico Bioinformatically predicted

Overview

Name   cqsA   Type   Regulator
Locus tag   AAIA70_RS26170 Genome accession   NZ_CP154265
Coordinates   2171930..2173111 (+) Length   393 a.a.
NCBI ID   WP_343291718.1    Uniprot ID   -
Organism   Vibrio harveyi strain 45T2     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 2166930..2178111
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AAIA70_RS26160 (AAIA70_26160) - 2169089..2170129 (+) 1041 WP_343291717.1 peptidoglycan DD-metalloendopeptidase family protein -
  AAIA70_RS26165 (AAIA70_26165) ylqF 2170451..2171395 (+) 945 WP_005447133.1 ribosome biogenesis GTPase YlqF -
  AAIA70_RS26170 (AAIA70_26170) cqsA 2171930..2173111 (+) 1182 WP_343291718.1 alpha-hydroxyketone-type quorum-sensing autoinducer synthase Regulator
  AAIA70_RS26175 (AAIA70_26175) - 2173245..2175290 (-) 2046 WP_017188911.1 hybrid sensor histidine kinase/response regulator -
  AAIA70_RS26180 (AAIA70_26180) - 2175577..2176194 (+) 618 WP_017819192.1 HAD family phosphatase -
  AAIA70_RS26185 (AAIA70_26185) - 2176269..2176817 (-) 549 WP_005447141.1 GNAT family N-acetyltransferase -

Sequence

Protein


Download         Length: 393 a.a.        Molecular weight: 43731.86 Da        Isoelectric Point: 6.5000

>NTDB_id=992816 AAIA70_RS26170 WP_343291718.1 2171930..2173111(+) (cqsA) [Vibrio harveyi strain 45T2]
MSDKLKTKPLPSFVEERLDFYIQDLIEQNENQKHLVLGKRPHSGAVVMQSNDYLSLSHNQLIQKAHRDAITEHDDNVVMS
AIFLQDDTSKPAFETQLADYVGMGSCLLSQSGWAANIGLLQTICPPNTPVYIDFFAHMSLWEGIRAAGAHAHAFMHNNMN
HLRKQIQRHGSGVIVVDSVYSTIGTIAPLHDIYEMAREFDCVLVVDESHSLGTHGPNGAGLVKALGLTDQVDFITVSLAK
TFAYRAGAILGPEKLAKTLPFVAYPAIFSSTVLPQEVIRLEKTLEVIKGADDKRTLLFNRAKELRTGLKQIGFNIRSESQ
IVALECGSERNTERVRDFLEERNVFGAVFCRPATGKNKNIIRFSINADMTSRDVDHVLTACQEAFNHPELEFA

Nucleotide


Download         Length: 1182 bp        

>NTDB_id=992816 AAIA70_RS26170 WP_343291718.1 2171930..2173111(+) (cqsA) [Vibrio harveyi strain 45T2]
ATGAGTGATAAACTGAAAACGAAACCTCTTCCTTCTTTTGTTGAGGAACGCCTAGACTTTTATATTCAAGACTTGATCGA
ACAAAACGAGAACCAGAAGCACTTGGTTTTGGGTAAGCGACCGCACTCCGGAGCGGTGGTCATGCAAAGCAACGACTACT
TATCGTTATCCCACAACCAACTGATTCAAAAGGCACATCGTGATGCAATTACCGAGCATGACGACAACGTAGTAATGTCT
GCAATCTTCCTGCAAGATGATACTTCCAAGCCTGCATTTGAAACCCAACTCGCCGATTACGTGGGAATGGGAAGCTGCTT
GCTCTCACAATCAGGATGGGCGGCAAACATCGGGTTGTTGCAAACGATTTGCCCACCAAATACGCCCGTCTATATCGACT
TTTTTGCGCATATGTCGTTATGGGAAGGTATTCGAGCAGCGGGAGCACACGCGCATGCATTTATGCACAACAATATGAAC
CACTTGCGTAAACAGATCCAACGTCATGGCTCCGGTGTGATTGTTGTCGATTCAGTTTATAGCACGATTGGTACTATCGC
CCCACTTCACGACATCTACGAAATGGCACGTGAATTTGATTGTGTATTGGTCGTCGATGAATCCCACTCACTTGGAACTC
ACGGTCCAAATGGCGCTGGTCTTGTGAAAGCGTTAGGGTTAACCGATCAAGTTGATTTCATTACGGTAAGTTTAGCTAAG
ACATTCGCATACCGTGCGGGGGCTATTCTTGGTCCTGAAAAGCTAGCTAAGACACTCCCATTTGTCGCGTATCCAGCGAT
TTTTAGTTCGACGGTGTTGCCACAAGAGGTGATTCGCTTAGAAAAAACGCTTGAGGTGATTAAGGGGGCTGACGATAAAC
GAACCTTACTGTTCAACCGAGCTAAAGAGCTAAGAACAGGATTAAAACAAATTGGCTTTAATATCCGTAGTGAATCTCAA
ATTGTCGCTTTGGAGTGCGGTAGCGAGAGAAATACGGAACGTGTACGTGACTTTCTTGAAGAACGTAATGTGTTTGGTGC
AGTATTCTGTCGCCCAGCAACAGGTAAGAACAAAAACATCATCCGATTTTCAATCAATGCAGATATGACTTCTCGCGATG
TGGACCACGTACTTACCGCTTGTCAGGAAGCATTTAACCATCCAGAACTAGAATTCGCATAA

Domains

Predicted by InterproScan.

Aminotransferase class I and II (Aminotran_1_2)

(47-379)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cqsA Vibrio cholerae strain A1552

57.364

98.473

0.565

Multiple sequence alignment