Detailed information NTG0992796

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: AAIA70_RS13660
• Genome accession: NZ_CP154264
• Coordinates: 2970192..2971175 (-)
• Length: 327 a.a.
• NCBI ID: WP_005452115.1
• Uniprot ID: A0A812FCY7
• Organism: Vibrio harveyi strain 45T2
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 2965192..2976175

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
AAIA70_RS13645 (AAIA70_13645)	recA	2965724..2966767 (-)	1044	WP_005436413.1	recombinase RecA	Machinery gene
AAIA70_RS13650 (AAIA70_13650)	pncC	2966969..2967451 (-)	483	WP_017189123.1	nicotinamide-nucleotide amidase	-
AAIA70_RS13655 (AAIA70_13655)	mutS	2967537..2970098 (+)	2562	WP_049535430.1	DNA mismatch repair protein MutS	-
AAIA70_RS13660 (AAIA70_13660)	rpoS	2970192..2971175 (-)	984	WP_005452115.1	RNA polymerase sigma factor RpoS	Regulator
AAIA70_RS13665 (AAIA70_13665)	-	2971256..2972179 (-)	924	WP_343291005.1	peptidoglycan DD-metalloendopeptidase family protein	-
AAIA70_RS13670 (AAIA70_13670)	-	2972194..2972820 (-)	627	WP_005452113.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
AAIA70_RS13675 (AAIA70_13675)	surE	2972820..2973596 (-)	777	WP_009698768.1	5'/3'-nucleotidase SurE	-
AAIA70_RS13680 (AAIA70_13680)	truD	2973596..2974639 (-)	1044	WP_038899661.1	tRNA pseudouridine(13) synthase TruD	-
AAIA70_RS13685 (AAIA70_13685)	ispF	2974685..2975161 (-)	477	WP_009698769.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
AAIA70_RS13690 (AAIA70_13690)	ispD	2975176..2975886 (-)	711	WP_005452107.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
AAIA70_RS13695 (AAIA70_13695)	ftsB	2975888..2976169 (-)	282	WP_005452106.1	cell division protein FtsB	-

Sequence

Protein

• Length: 327 a.a.
• Molecular weight: 37236.10 Da
• Isoelectric Point: 4.7232

>NTDB_id=992796 AAIA70_RS13660 WP_005452115.1 2970192..2971175(-) (rpoS) [Vibrio harveyi strain 45T2]
MSISNTVTKVEEFEYDNAQSEGISNGLEKPSNGTKTAAREEFDASSKSLDATQLYLGEIGFSPLLTAEEEVLYARRALRG
DEAARKRMIESNLRLVVKISRRYSNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERALMNQTRTIR
LPIHVVKELNIYLRTARELSQKLDHEPTAEEIAAQLDIPVEDVSKMLRLNERISSVDTPIGGDGEKALLDIIPDANNSDP
EVSTQDDDIKSSLIHWLEELNPKQKEVLARRFGLLGYEPSTLEEVGREIGLTRERVRQIQVEGLRRLREILIKQGLNMEN
LFNVEDD

Nucleotide

• Length: 984 bp

>NTDB_id=992796 AAIA70_RS13660 WP_005452115.1 2970192..2971175(-) (rpoS) [Vibrio harveyi strain 45T2]
ATGAGTATCAGCAACACAGTAACCAAAGTTGAAGAGTTCGAATATGATAATGCACAATCGGAAGGCATTTCTAACGGACT
TGAAAAACCATCTAACGGAACCAAAACAGCAGCACGCGAAGAGTTTGATGCGAGCAGCAAGAGCCTAGACGCGACTCAGC
TTTACCTAGGTGAAATTGGTTTCTCACCTCTACTTACTGCAGAAGAAGAAGTACTTTATGCACGACGTGCACTGCGTGGC
GATGAAGCCGCTCGCAAACGCATGATCGAAAGTAACTTGCGTCTTGTAGTGAAGATCTCTCGCCGATACAGCAATCGTGG
TCTTGCGCTTCTTGATCTTATTGAAGAAGGTAACCTAGGTTTGATCCGTGCGGTCGAGAAGTTTGATCCAGAACGAGGCT
TCCGTTTCTCAACTTACGCGACGTGGTGGATTCGCCAAACGATCGAACGTGCGTTGATGAACCAAACTCGTACAATCCGT
CTGCCAATTCATGTGGTTAAAGAGCTGAACATTTATCTGCGTACAGCGCGTGAACTTTCTCAGAAGCTCGACCATGAACC
AACAGCAGAAGAGATTGCTGCACAGTTAGATATCCCAGTAGAAGACGTCAGTAAAATGCTTCGCCTTAACGAGCGTATTA
GCTCTGTCGATACTCCAATCGGTGGTGACGGCGAGAAAGCGTTACTGGATATTATTCCTGATGCAAACAACTCGGATCCT
GAAGTTTCCACTCAAGACGATGACATCAAATCTTCATTGATCCATTGGCTAGAAGAGCTGAATCCAAAACAGAAAGAAGT
GCTGGCACGTCGTTTTGGTCTGCTTGGTTATGAGCCATCAACGCTTGAAGAAGTGGGACGTGAAATTGGTTTAACACGCG
AACGTGTTCGCCAGATCCAAGTGGAAGGCTTACGTCGACTACGCGAGATCTTGATTAAACAAGGTCTGAACATGGAAAAC
TTGTTCAACGTAGAAGACGACTAA

Domains

Predicted by InterproScan.

• Sigma-70 region 3 (Sigma70_r3) (168-241)

• Sigma-70, region 4 (Sigma70_r4) (256-309)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (50-83)

• Sigma-70 region 2 (Sigma70_r2) (88-157)

3D structure

• AlphaFold DB: A0A812FCY7

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	83.832	100	0.856