Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   AAIA70_RS13545 Genome accession   NZ_CP154264
Coordinates   2948328..2948846 (-) Length   172 a.a.
NCBI ID   WP_343291003.1    Uniprot ID   -
Organism   Vibrio harveyi strain 45T2     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 2943328..2953846
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AAIA70_RS13520 (AAIA70_13520) rimM 2943380..2943928 (-) 549 WP_005446245.1 ribosome maturation factor RimM -
  AAIA70_RS13525 (AAIA70_13525) rpsP 2943957..2944205 (-) 249 WP_004410028.1 30S ribosomal protein S16 -
  AAIA70_RS13530 (AAIA70_13530) ffh 2944416..2945798 (-) 1383 WP_005446242.1 signal recognition particle protein -
  AAIA70_RS13535 (AAIA70_13535) - 2946012..2946806 (+) 795 WP_005446240.1 inner membrane protein YpjD -
  AAIA70_RS13540 (AAIA70_13540) - 2946961..2948235 (+) 1275 WP_047512919.1 CNNM domain-containing protein -
  AAIA70_RS13545 (AAIA70_13545) luxS 2948328..2948846 (-) 519 WP_343291003.1 S-ribosylhomocysteine lyase Regulator
  AAIA70_RS13550 (AAIA70_13550) - 2948933..2949496 (-) 564 WP_343291428.1 hypothetical protein -
  AAIA70_RS13555 (AAIA70_13555) gshA 2949558..2951126 (-) 1569 WP_029790338.1 glutamate--cysteine ligase -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 19080.83 Da        Isoelectric Point: 4.7221

>NTDB_id=992793 AAIA70_RS13545 WP_343291003.1 2948328..2948846(-) (luxS) [Vibrio harveyi strain 45T2]
MPLLDSFTVDHTRMHAPAVRVAKTMQTPKGDTITVFDLRFTAPNKDILSEKGIHTLEHLYAGFMRNYLNGDSVEIIDISP
MGCRTGFYMSLIGTPSEQQVADAWVAAMEDVLKVESQNKIPELNEYQCGTAAMHSLDEAKQIAKNILEAGVAVNKNDDLA
LPESMLKELRID

Nucleotide


Download         Length: 519 bp        

>NTDB_id=992793 AAIA70_RS13545 WP_343291003.1 2948328..2948846(-) (luxS) [Vibrio harveyi strain 45T2]
ATGCCTTTATTAGACAGTTTTACCGTAGACCACACACGTATGCATGCGCCAGCAGTTCGTGTGGCTAAAACGATGCAAAC
TCCAAAGGGAGACACCATCACAGTATTTGACTTACGTTTTACTGCACCGAACAAAGACATCCTTTCTGAGAAGGGAATTC
ACACTTTAGAGCATTTGTACGCTGGCTTTATGCGCAACTACTTAAACGGTGATAGCGTTGAGATCATCGATATCTCACCA
ATGGGTTGCCGTACCGGTTTCTACATGAGCTTGATTGGTACGCCTTCAGAGCAGCAAGTGGCGGATGCTTGGGTTGCAGC
AATGGAAGACGTATTGAAAGTAGAAAGTCAAAACAAGATCCCTGAGCTGAATGAATACCAATGTGGTACAGCTGCAATGC
ACTCTTTAGATGAGGCAAAGCAAATCGCGAAAAACATTCTAGAAGCGGGCGTTGCAGTCAATAAGAATGATGATTTGGCA
CTGCCAGAATCTATGCTGAAAGAGTTACGTATCGACTAA

Domains

Predicted by InterproScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-153)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

85.38

99.419

0.849

Multiple sequence alignment