Detailed information
Bioinformatically predicted
Overview
| Name | sbcB | Type | Machinery gene |
| Locus tag | AAIA70_RS09085 | Genome accession | NZ_CP154264 |
| Coordinates | 2020355..2021776 (+) | Length | 473 a.a. |
| NCBI ID | WP_343290830.1 | Uniprot ID | - |
| Organism | Vibrio harveyi strain 45T2 | ||
| Function | promote homologous recombination (predicted from homology) Homologous recombination |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Genomic island | 2003618..2031957 | 2020355..2021776 | within | 0 |
Gene organization within MGE regions
Location: 2003618..2031957
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| AAIA70_RS08995 (AAIA70_08995) | - | 2003618..2004124 (-) | 507 | WP_343290822.1 | AAA family ATPase | - |
| AAIA70_RS09000 (AAIA70_09000) | - | 2004184..2004417 (-) | 234 | WP_017818015.1 | hypothetical protein | - |
| AAIA70_RS09005 (AAIA70_09005) | - | 2004672..2005088 (-) | 417 | WP_047517001.1 | lysozyme inhibitor LprI family protein | - |
| AAIA70_RS09010 (AAIA70_09010) | - | 2005252..2005608 (-) | 357 | WP_017190311.1 | hypothetical protein | - |
| AAIA70_RS09015 (AAIA70_09015) | - | 2005662..2006183 (-) | 522 | WP_343290823.1 | hypothetical protein | - |
| AAIA70_RS09020 (AAIA70_09020) | - | 2006242..2007423 (-) | 1182 | WP_237359292.1 | hypothetical protein | - |
| AAIA70_RS09025 (AAIA70_09025) | btuD | 2007670..2008437 (-) | 768 | WP_080654225.1 | vitamin B12 ABC transporter ATP-binding protein BtuD | - |
| AAIA70_RS09030 (AAIA70_09030) | btuC | 2008424..2009419 (-) | 996 | WP_020197786.1 | vitamin B12 ABC transporter permease BtuC | - |
| AAIA70_RS09035 (AAIA70_09035) | - | 2009522..2010550 (-) | 1029 | WP_154203633.1 | succinylglutamate desuccinylase | - |
| AAIA70_RS09040 (AAIA70_09040) | - | 2010789..2012588 (-) | 1800 | WP_343290824.1 | M3 family oligoendopeptidase | - |
| AAIA70_RS09045 (AAIA70_09045) | cobC | 2012671..2013285 (-) | 615 | WP_256893495.1 | alpha-ribazole phosphatase | - |
| AAIA70_RS09050 (AAIA70_09050) | cobU | 2013282..2013830 (-) | 549 | WP_343290825.1 | bifunctional adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase | - |
| AAIA70_RS09055 (AAIA70_09055) | - | 2013827..2014633 (-) | 807 | WP_343290826.1 | adenosylcobinamide-GDP ribazoletransferase | - |
| AAIA70_RS09060 (AAIA70_09060) | cobT | 2014633..2015676 (-) | 1044 | WP_343290827.1 | nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase | - |
| AAIA70_RS09065 (AAIA70_09065) | - | 2015696..2016307 (-) | 612 | WP_343290828.1 | flavin reductase family protein | - |
| AAIA70_RS09070 (AAIA70_09070) | - | 2017027..2017722 (+) | 696 | WP_343290829.1 | NAD(P)H-binding protein | - |
| AAIA70_RS09075 (AAIA70_09075) | - | 2017917..2019290 (+) | 1374 | WP_017190321.1 | L-cystine transporter | - |
| AAIA70_RS09080 (AAIA70_09080) | - | 2019512..2020192 (+) | 681 | WP_005445535.1 | DUF1826 domain-containing protein | - |
| AAIA70_RS09085 (AAIA70_09085) | sbcB | 2020355..2021776 (+) | 1422 | WP_343290830.1 | exodeoxyribonuclease I | Machinery gene |
| AAIA70_RS09090 (AAIA70_09090) | - | 2021835..2022209 (+) | 375 | WP_343290831.1 | CidA/LrgA family protein | - |
| AAIA70_RS09095 (AAIA70_09095) | - | 2022211..2022888 (+) | 678 | WP_005445538.1 | LrgB family protein | - |
| AAIA70_RS09100 (AAIA70_09100) | cdd | 2023144..2024031 (+) | 888 | WP_005445539.1 | cytidine deaminase | - |
| AAIA70_RS09105 (AAIA70_09105) | purT | 2024180..2025355 (+) | 1176 | WP_343290832.1 | formate-dependent phosphoribosylglycinamide formyltransferase | - |
| AAIA70_RS09110 (AAIA70_09110) | - | 2025432..2026082 (-) | 651 | WP_005445541.1 | thiopurine S-methyltransferase | - |
| AAIA70_RS09115 (AAIA70_09115) | - | 2026419..2027192 (+) | 774 | WP_005445543.1 | phosphoribosylglycinamide formyltransferase | - |
| AAIA70_RS09120 (AAIA70_09120) | ihfA | 2027336..2027632 (-) | 297 | WP_005445544.1 | integration host factor subunit alpha | - |
| AAIA70_RS09125 (AAIA70_09125) | - | 2028159..2029037 (+) | 879 | WP_074050527.1 | AEC family transporter | - |
| AAIA70_RS09130 (AAIA70_09130) | - | 2029220..2029903 (+) | 684 | WP_343290833.1 | hypothetical protein | - |
| AAIA70_RS09135 (AAIA70_09135) | - | 2030056..2030316 (+) | 261 | WP_005445548.1 | hypothetical protein | - |
| AAIA70_RS09140 (AAIA70_09140) | - | 2030316..2030699 (+) | 384 | WP_330472591.1 | hypothetical protein | - |
| AAIA70_RS09145 (AAIA70_09145) | - | 2030690..2031028 (+) | 339 | WP_110415027.1 | hypothetical protein | - |
| AAIA70_RS09150 (AAIA70_09150) | - | 2031232..2031957 (+) | 726 | WP_343290834.1 | metallophosphoesterase | - |
Sequence
Protein
Download Length: 473 a.a. Molecular weight: 54539.89 Da Isoelectric Point: 4.9808
>NTDB_id=992784 AAIA70_RS09085 WP_343290830.1 2020355..2021776(+) (sbcB) [Vibrio harveyi strain 45T2]
MHQDNQPTFFFFDYETWGTSPAKDRPSQFAGVRTDENFNIIGEPLVMYCRPPADYLPSPEAALITGITPQKAMQEGLPEP
EFIAKIHAELSKPKTTSLGYNSIRFDDEVTRYTCYRNFIDPYAWSWQNGNSRWDLLDVMRACHALRPEGVEWPENDEGFT
SFKLEHLSVANGIEHSNAHDAMADVIATIEMAKKVKAAQPKLFDYFFSMRNKRKLNELVDIVNMAPLMHVSGMLGRECQY
TSWIVPVAWHPTNNNAVITIDLAKDPQPILELSAEELKERLYTKRDELGDLLPVPVKLVHLNKCPILAPAKTLTAENAEV
IGIDRQQCLNNLALLRQHPEIREKLISLFSIEREFEKSNDVDTQLYDGFFSPADRAAMDIIRETDPNNLAALDIEFDDKR
IKPLLFRYRARHYAGTLDEQEQRRWAQHCREVFESQIEEYMMNLENLVHEHESDEKKIAILKSVYRYVESLAS
MHQDNQPTFFFFDYETWGTSPAKDRPSQFAGVRTDENFNIIGEPLVMYCRPPADYLPSPEAALITGITPQKAMQEGLPEP
EFIAKIHAELSKPKTTSLGYNSIRFDDEVTRYTCYRNFIDPYAWSWQNGNSRWDLLDVMRACHALRPEGVEWPENDEGFT
SFKLEHLSVANGIEHSNAHDAMADVIATIEMAKKVKAAQPKLFDYFFSMRNKRKLNELVDIVNMAPLMHVSGMLGRECQY
TSWIVPVAWHPTNNNAVITIDLAKDPQPILELSAEELKERLYTKRDELGDLLPVPVKLVHLNKCPILAPAKTLTAENAEV
IGIDRQQCLNNLALLRQHPEIREKLISLFSIEREFEKSNDVDTQLYDGFFSPADRAAMDIIRETDPNNLAALDIEFDDKR
IKPLLFRYRARHYAGTLDEQEQRRWAQHCREVFESQIEEYMMNLENLVHEHESDEKKIAILKSVYRYVESLAS
Nucleotide
Download Length: 1422 bp
>NTDB_id=992784 AAIA70_RS09085 WP_343290830.1 2020355..2021776(+) (sbcB) [Vibrio harveyi strain 45T2]
ATGCACCAAGATAATCAGCCCACTTTTTTCTTTTTTGATTACGAGACTTGGGGAACAAGTCCAGCCAAAGATCGTCCAAG
CCAGTTCGCAGGCGTTCGCACTGATGAAAACTTCAATATCATCGGTGAACCTTTGGTCATGTACTGTCGCCCACCTGCTG
ATTACCTTCCTTCGCCAGAAGCAGCTTTGATCACTGGTATTACACCACAAAAAGCAATGCAAGAAGGCTTACCTGAACCT
GAGTTTATCGCCAAAATTCATGCTGAATTGTCTAAACCAAAGACGACTAGCCTTGGCTACAACAGCATACGTTTTGATGA
TGAAGTCACTCGTTACACTTGCTACCGAAACTTCATCGATCCATACGCATGGAGCTGGCAAAACGGCAACTCACGATGGG
ATTTGCTTGACGTGATGCGAGCATGTCATGCCCTGCGTCCTGAAGGCGTAGAATGGCCAGAGAACGATGAAGGCTTTACA
AGCTTCAAGCTAGAACATTTATCTGTAGCAAATGGCATTGAACACAGCAATGCTCACGATGCGATGGCCGACGTGATTGC
CACGATTGAAATGGCGAAGAAAGTTAAAGCCGCCCAACCTAAGCTATTTGACTACTTTTTCTCGATGCGTAACAAGCGCA
AACTCAATGAGCTGGTTGATATTGTCAATATGGCTCCGTTAATGCATGTATCAGGCATGCTTGGGCGTGAATGCCAATAC
ACAAGCTGGATTGTGCCTGTGGCTTGGCACCCAACCAACAACAATGCTGTTATCACGATTGATTTAGCCAAAGATCCTCA
GCCGATCCTTGAACTTTCAGCGGAAGAACTGAAAGAACGCTTGTACACCAAGCGTGACGAATTGGGCGACTTACTGCCTG
TACCAGTGAAGCTAGTGCACCTGAACAAGTGCCCTATTCTCGCTCCAGCAAAAACGTTAACCGCGGAAAATGCGGAAGTC
ATTGGTATTGACCGCCAACAATGTTTAAACAATTTAGCGTTGTTGCGCCAACACCCAGAGATCCGAGAGAAGCTGATTAG
TCTATTCTCTATAGAACGTGAATTCGAAAAGAGTAATGACGTTGATACGCAGCTTTACGATGGTTTTTTCTCGCCTGCTG
ATCGCGCTGCGATGGACATCATTCGTGAAACCGATCCGAATAACTTAGCCGCGCTGGACATTGAATTCGATGATAAACGA
ATCAAGCCATTGCTTTTCCGTTACCGTGCTCGCCATTATGCAGGCACATTAGATGAACAAGAACAAAGACGCTGGGCACA
ACATTGTCGTGAAGTTTTCGAAAGTCAGATTGAAGAGTACATGATGAATTTAGAAAACTTAGTTCACGAACATGAAAGTG
ACGAAAAGAAGATAGCAATATTAAAATCCGTCTATCGTTATGTAGAGAGCCTAGCCTCCTAA
ATGCACCAAGATAATCAGCCCACTTTTTTCTTTTTTGATTACGAGACTTGGGGAACAAGTCCAGCCAAAGATCGTCCAAG
CCAGTTCGCAGGCGTTCGCACTGATGAAAACTTCAATATCATCGGTGAACCTTTGGTCATGTACTGTCGCCCACCTGCTG
ATTACCTTCCTTCGCCAGAAGCAGCTTTGATCACTGGTATTACACCACAAAAAGCAATGCAAGAAGGCTTACCTGAACCT
GAGTTTATCGCCAAAATTCATGCTGAATTGTCTAAACCAAAGACGACTAGCCTTGGCTACAACAGCATACGTTTTGATGA
TGAAGTCACTCGTTACACTTGCTACCGAAACTTCATCGATCCATACGCATGGAGCTGGCAAAACGGCAACTCACGATGGG
ATTTGCTTGACGTGATGCGAGCATGTCATGCCCTGCGTCCTGAAGGCGTAGAATGGCCAGAGAACGATGAAGGCTTTACA
AGCTTCAAGCTAGAACATTTATCTGTAGCAAATGGCATTGAACACAGCAATGCTCACGATGCGATGGCCGACGTGATTGC
CACGATTGAAATGGCGAAGAAAGTTAAAGCCGCCCAACCTAAGCTATTTGACTACTTTTTCTCGATGCGTAACAAGCGCA
AACTCAATGAGCTGGTTGATATTGTCAATATGGCTCCGTTAATGCATGTATCAGGCATGCTTGGGCGTGAATGCCAATAC
ACAAGCTGGATTGTGCCTGTGGCTTGGCACCCAACCAACAACAATGCTGTTATCACGATTGATTTAGCCAAAGATCCTCA
GCCGATCCTTGAACTTTCAGCGGAAGAACTGAAAGAACGCTTGTACACCAAGCGTGACGAATTGGGCGACTTACTGCCTG
TACCAGTGAAGCTAGTGCACCTGAACAAGTGCCCTATTCTCGCTCCAGCAAAAACGTTAACCGCGGAAAATGCGGAAGTC
ATTGGTATTGACCGCCAACAATGTTTAAACAATTTAGCGTTGTTGCGCCAACACCCAGAGATCCGAGAGAAGCTGATTAG
TCTATTCTCTATAGAACGTGAATTCGAAAAGAGTAATGACGTTGATACGCAGCTTTACGATGGTTTTTTCTCGCCTGCTG
ATCGCGCTGCGATGGACATCATTCGTGAAACCGATCCGAATAACTTAGCCGCGCTGGACATTGAATTCGATGATAAACGA
ATCAAGCCATTGCTTTTCCGTTACCGTGCTCGCCATTATGCAGGCACATTAGATGAACAAGAACAAAGACGCTGGGCACA
ACATTGTCGTGAAGTTTTCGAAAGTCAGATTGAAGAGTACATGATGAATTTAGAAAACTTAGTTCACGAACATGAAAGTG
ACGAAAAGAAGATAGCAATATTAAAATCCGTCTATCGTTATGTAGAGAGCCTAGCCTCCTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| sbcB | Vibrio cholerae O1 biovar El Tor strain E7946 |
79.07 |
100 |
0.791 |