Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   EC1639_RS03255 Genome accession   NZ_LR025101
Coordinates   677299..677775 (+) Length   158 a.a.
NCBI ID   WP_001186773.1    Uniprot ID   -
Organism   Escherichia coli isolate EC-1639     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 672299..682775
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EC1639_RS03225 (EC1639_00651) - 672423..675269 (+) 2847 WP_001586602.1 Ag43/Cah family autotransporter adhesin -
  EC1639_RS03230 (EC1639_00652) - 675340..675535 (+) 196 Protein_603 DUF905 family protein -
  EC1639_RS03240 (EC1639_00653) - 675653..676471 (+) 819 WP_001234716.1 DUF932 domain-containing protein -
  EC1639_RS25860 (EC1639_00654) - 676471..676644 (+) 174 WP_001183321.1 hypothetical protein -
  EC1639_RS03250 (EC1639_00655) - 676810..677283 (+) 474 WP_001387789.1 antirestriction protein -
  EC1639_RS03255 (EC1639_00656) radC 677299..677775 (+) 477 WP_001186773.1 RadC family protein Machinery gene
  EC1639_RS03260 (EC1639_00657) - 677838..678059 (+) 222 WP_000692300.1 DUF987 domain-containing protein -
  EC1639_RS03265 (EC1639_00659) - 678222..678590 (+) 369 WP_001295723.1 type IV toxin-antitoxin system YeeU family antitoxin -
  EC1639_RS03270 (EC1639_00660) - 678680..679054 (+) 375 WP_000854765.1 TA system toxin CbtA family protein -
  EC1639_RS03275 (EC1639_00661) - 679051..679542 (+) 492 WP_001586604.1 DUF5983 family protein -
  EC1639_RS03280 (EC1639_00662) - 679559..679735 (+) 177 WP_001586605.1 DUF957 domain-containing protein -
  EC1639_RS26005 (EC1639_00663) - 679841..679990 (+) 150 Protein_613 hypothetical protein -
  EC1639_RS26585 - 679960..680094 (+) 135 Protein_614 transcriptional regulator -

Sequence

Protein


Download         Length: 158 a.a.        Molecular weight: 17688.29 Da        Isoelectric Point: 7.2020

>NTDB_id=992779 EC1639_RS03255 WP_001186773.1 677299..677775(+) (radC) [Escherichia coli isolate EC-1639]
MQQLSFLPGEMTPGERSLIQRALKTLDRHLHEPGVAFTSTRAAREWLILNMAGLEREEFRVLYLNNQNQLIAGETLFTGT
INRTEVHPREVIKRALYHNAAAVVLAHNHPSGEVTPSKADRLITERLVQALGLVDIRVPDHLIVGGNQVFSFAEHGLL

Nucleotide


Download         Length: 477 bp        

>NTDB_id=992779 EC1639_RS03255 WP_001186773.1 677299..677775(+) (radC) [Escherichia coli isolate EC-1639]
ATGCAACAGCTTTCCTTTCTGCCCGGAGAGATGACGCCCGGCGAGCGCAGCCTCATTCAACGGGCCCTGAAAACCCTGGA
CCGCCATCTTCATGAACCCGGCGTGGCCTTCACCTCCACCCGTGCGGCACGGGAATGGCTGATTCTGAACATGGCGGGAC
TGGAGCGTGAAGAGTTCCGGGTGCTGTATCTGAACAACCAGAATCAGCTGATTGCCGGTGAAACCCTCTTCACCGGCACC
ATCAACCGCACGGAAGTCCATCCCCGGGAAGTGATTAAACGCGCCCTGTATCACAATGCCGCTGCTGTGGTGCTGGCACA
CAATCACCCGTCCGGTGAAGTCACACCCAGTAAGGCAGACCGGCTTATCACCGAACGTCTGGTACAGGCTCTGGGCCTGG
TGGATATCCGGGTGCCGGACCATCTGATAGTCGGTGGCAACCAGGTTTTCTCCTTTGCCGAACATGGTCTGCTTTAA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(38-157)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

54.867

71.519

0.392

Multiple sequence alignment