Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   AAH582_RS00390 Genome accession   NZ_CP154261
Coordinates   81336..82721 (+) Length   461 a.a.
NCBI ID   WP_343320899.1    Uniprot ID   -
Organism   Sphingobacterium multivorum strain FW102     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 76336..87721
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AAH582_RS00370 (AAH582_00370) xseB 76428..76649 (-) 222 WP_046672619.1 exodeoxyribonuclease VII small subunit -
  AAH582_RS00375 (AAH582_00375) xseA 76699..77985 (-) 1287 WP_343320896.1 exodeoxyribonuclease VII large subunit -
  AAH582_RS00380 (AAH582_00380) - 78216..79940 (+) 1725 WP_343320897.1 serine hydrolase domain-containing protein -
  AAH582_RS00385 (AAH582_00385) - 79937..81097 (+) 1161 WP_343320898.1 dipeptidase -
  AAH582_RS00390 (AAH582_00390) radA 81336..82721 (+) 1386 WP_343320899.1 DNA repair protein RadA Machinery gene
  AAH582_RS00395 (AAH582_00395) - 82798..83481 (-) 684 WP_046672624.1 TlpA disulfide reductase family protein -
  AAH582_RS00400 (AAH582_00400) - 83554..84702 (+) 1149 WP_343320900.1 methionine aminotransferase -
  AAH582_RS00405 (AAH582_00405) nagB 84817..86772 (+) 1956 WP_262506837.1 glucosamine-6-phosphate deaminase -

Sequence

Protein


Download         Length: 461 a.a.        Molecular weight: 50600.99 Da        Isoelectric Point: 7.0182

>NTDB_id=992756 AAH582_RS00390 WP_343320899.1 81336..82721(+) (radA) [Sphingobacterium multivorum strain FW102]
MAKSKSAYFCQNCGYESPKWMGQCPSCKQWNSFVEEVVEKASSKVPEWRSSTTGGSTKRANKAAIIHEIVYQDELRILTP
DQEFNRVLGGGIVPGSLVLIGGEPGIGKSTLMLQLALSIPQVKTLYISGEESEQQIKMRAERLSQSSKANCYILTETSTQ
NIFKQVETVQPNVIVIDSIQTLHSSQIESAPGSVSQVRECTAELLRFAKETSTPVFIVGHITKDGSIAGPKVLEHMVDTV
LQFEGDRHHVYRILRAVKNRFGSASELGIYEMQGSGLREVSNPSEIMISQRDEPVSGVSIAAMLEGMRPMMIEVQALVSN
TAFGNAQRSSTGYDTKRLNMLLAVLEKRFGFRLSAQDVFLNIAGGLRVEDPAIDLAVVVAIISSQQDIAIRSNLTFAGEI
GLSGEIRAVNRIEQRIQEAEKLGFDGIFISKFNTKGLDAKKYNIAIRPVAKLEDIFSALFG

Nucleotide


Download         Length: 1386 bp        

>NTDB_id=992756 AAH582_RS00390 WP_343320899.1 81336..82721(+) (radA) [Sphingobacterium multivorum strain FW102]
ATGGCAAAATCAAAATCTGCATACTTCTGTCAAAACTGTGGCTACGAGTCTCCCAAATGGATGGGGCAATGCCCTTCATG
CAAGCAATGGAATAGCTTTGTTGAGGAAGTCGTCGAAAAGGCGAGCTCAAAAGTGCCTGAATGGCGTAGTTCTACCACAG
GAGGAAGCACAAAGAGAGCGAATAAAGCTGCGATCATCCACGAAATTGTCTATCAGGATGAATTACGGATATTGACTCCT
GATCAGGAGTTCAACCGGGTTCTTGGCGGCGGTATTGTTCCGGGGTCATTGGTACTTATCGGAGGCGAACCGGGTATTGG
GAAGTCTACGTTGATGTTACAGCTCGCTTTATCGATCCCACAAGTCAAGACACTTTATATTTCTGGGGAAGAAAGCGAAC
AGCAAATTAAGATGCGGGCAGAACGATTGTCACAATCATCCAAAGCAAATTGTTATATTCTTACCGAAACATCTACTCAA
AATATTTTCAAGCAGGTCGAGACGGTACAGCCCAATGTTATTGTCATAGATTCTATACAAACTTTACATTCCTCACAAAT
TGAATCGGCACCAGGGTCGGTTTCTCAGGTACGCGAATGTACCGCAGAGTTACTTCGGTTTGCAAAGGAAACGAGTACAC
CAGTTTTTATTGTTGGGCATATTACCAAGGACGGGTCTATCGCAGGTCCCAAGGTTTTAGAACATATGGTGGATACGGTG
CTTCAATTCGAAGGTGATCGCCACCACGTCTACCGAATTTTACGGGCTGTAAAAAATCGCTTTGGATCGGCTTCAGAACT
CGGTATTTATGAAATGCAGGGGTCGGGGCTACGGGAAGTGTCGAATCCTTCGGAGATTATGATTTCCCAACGCGATGAAC
CTGTCAGTGGGGTTTCCATTGCGGCGATGCTCGAAGGAATGCGCCCTATGATGATTGAAGTACAGGCGCTGGTGAGTAAT
ACGGCATTTGGAAATGCACAGCGCTCTTCCACAGGTTACGACACGAAGCGATTAAATATGCTGTTGGCTGTTTTAGAGAA
ACGCTTTGGTTTTAGGTTAAGCGCACAAGATGTATTTTTGAATATTGCCGGTGGGTTGCGTGTTGAAGATCCTGCGATCG
ATTTGGCTGTCGTTGTTGCAATTATTTCTTCACAACAGGACATCGCGATTCGCTCCAATCTGACTTTCGCAGGTGAGATT
GGTTTATCGGGCGAAATCAGAGCCGTAAATCGTATAGAACAGCGGATACAGGAGGCTGAGAAGCTTGGCTTTGATGGTAT
TTTTATTTCTAAATTCAATACCAAAGGATTGGACGCTAAAAAATATAATATTGCCATCCGTCCGGTTGCTAAATTGGAGG
ACATCTTCAGTGCCCTGTTTGGCTAG

Domains

Predicted by InterproScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

AAA domain (AAA_25)

(75-225)

Subunit ChlI of Mg-chelatase (ChlI)

(348-432)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Streptococcus pneumoniae D39

52.928

100

0.529
  radA Streptococcus mitis NCTC 12261

52.928

100

0.529
  radA Streptococcus pneumoniae Rx1

52.928

100

0.529
  radA Streptococcus pneumoniae R6

52.928

100

0.529
  radA Streptococcus pneumoniae TIGR4

52.928

100

0.529
  radA Streptococcus mitis SK321

52.711

100

0.527
  radA Bacillus subtilis subsp. subtilis str. 168

53.95

96.095

0.518

Multiple sequence alignment