Detailed information    

insolico Bioinformatically predicted

Overview

Name   cytR   Type   Regulator
Locus tag   EC7215_RS01230 Genome accession   NZ_LR025096
Coordinates   251503..252528 (-) Length   341 a.a.
NCBI ID   WP_000644897.1    Uniprot ID   B7LA31
Organism   Escherichia coli isolate EC-7215     
Function   promote competence gene expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 246503..257528
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EC7215_RS01200 (EC7215_00498) zapB 246587..246832 (+) 246 WP_001296623.1 septal ring assembly protein ZapB -
  EC7215_RS01205 (EC7215_00499) rraA 246917..247402 (-) 486 WP_000872908.1 ribonuclease E activity regulator RraA -
  EC7215_RS01210 (EC7215_00500) menA 247495..248421 (-) 927 WP_000139496.1 1,4-dihydroxy-2-naphthoate polyprenyltransferase -
  EC7215_RS01215 (EC7215_00501) hslU 248488..249819 (-) 1332 WP_001293343.1 HslU--HslV peptidase ATPase subunit -
  EC7215_RS01220 (EC7215_00502) hslV 249829..250359 (-) 531 WP_000208242.1 ATP-dependent protease subunit HslV -
  EC7215_RS01225 (EC7215_00503) ftsN 250452..251411 (-) 960 WP_000068834.1 cell division protein FtsN -
  EC7215_RS01230 (EC7215_00504) cytR 251503..252528 (-) 1026 WP_000644897.1 DNA-binding transcriptional regulator CytR Regulator
  EC7215_RS01235 (EC7215_00505) priA 252684..254882 (-) 2199 WP_001297074.1 primosomal protein N' Machinery gene
  EC7215_RS01240 (EC7215_00506) rpmE 255085..255297 (+) 213 WP_000710769.1 50S ribosomal protein L31 -

Sequence

Protein


Download         Length: 341 a.a.        Molecular weight: 37800.74 Da        Isoelectric Point: 6.3001

>NTDB_id=992691 EC7215_RS01230 WP_000644897.1 251503..252528(-) (cytR) [Escherichia coli isolate EC-7215]
MKAKKQETAATMKDVALKAKVSTATVSRALMNPDKVSQATRNRVEKAAREVGYLPQPMGRNVKRNESRTILVIVPDICDP
FFSEIIRGIEVTAANHGYLVLIGDCAHQNQQEKTFIDLIITKQIDGMLLLGSRLPFDASIEEQRNLPPMVMANEFAPELE
LPTVHIDNLTAAFDAVNYLYEQGHKRIGCIAGPEEMPLCHYRLQGYVQALHRCGIMVDPQYIARGDFTFEAGSKAMQQLL
DLPQPPTAVFCHSDVMALGALSQAKRQGLKVPEDLSIIGFDNIDLTQFCDPPLTTIAQPRYEIGREAMLLLLDQMQGQHV
GSGSRLMDCELIIRGSTRALP

Nucleotide


Download         Length: 1026 bp        

>NTDB_id=992691 EC7215_RS01230 WP_000644897.1 251503..252528(-) (cytR) [Escherichia coli isolate EC-7215]
GTGAAAGCGAAGAAGCAGGAAACTGCCGCGACCATGAAAGACGTTGCCCTCAAGGCAAAAGTCTCTACAGCGACTGTCTC
CCGAGCATTAATGAATCCCGATAAAGTCTCCCAGGCCACCCGTAATCGGGTTGAAAAAGCGGCCCGGGAAGTGGGTTATT
TACCGCAACCTATGGGGCGCAACGTCAAGCGTAATGAATCCCGCACCATTCTGGTGATTGTCCCGGATATCTGCGATCCC
TTCTTTAGCGAAATTATTCGCGGTATCGAAGTTACGGCGGCAAATCACGGATATCTGGTGCTGATTGGCGACTGTGCGCA
TCAAAATCAGCAGGAAAAAACCTTTATCGATTTGATCATCACCAAGCAAATTGATGGCATGTTGCTGCTGGGCTCAAGGC
TGCCGTTTGATGCCAGCATTGAGGAACAGCGTAATCTGCCGCCGATGGTGATGGCGAACGAATTTGCACCGGAACTGGAG
CTGCCTACCGTTCATATCGACAATCTGACCGCCGCATTTGATGCAGTAAATTATTTATATGAGCAAGGGCATAAACGGAT
TGGCTGTATAGCCGGTCCCGAAGAGATGCCACTGTGTCACTACCGCCTGCAAGGCTATGTTCAGGCGCTGCATCGCTGCG
GCATTATGGTTGATCCGCAATACATCGCCCGTGGCGACTTCACCTTCGAAGCCGGAAGCAAAGCGATGCAGCAGCTGCTT
GATCTTCCACAACCGCCTACTGCTGTCTTCTGCCATAGCGATGTGATGGCGCTCGGCGCACTTTCTCAGGCAAAACGCCA
GGGGCTGAAAGTCCCGGAAGACCTTTCCATAATCGGTTTTGATAACATCGACCTGACGCAATTTTGTGATCCGCCGCTGA
CAACCATCGCGCAGCCGCGTTACGAAATCGGTCGGGAAGCTATGCTGTTATTGCTTGATCAAATGCAGGGGCAACACGTT
GGCAGTGGCTCTCGTTTAATGGACTGCGAACTTATCATCCGGGGATCAACACGCGCGTTACCTTAA

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, lacI family (LacI)

(11-56)

Periplasmic binding protein-like domain (Peripla_BP_3)

(176-337)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB B7LA31

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cytR Vibrio parahaemolyticus RIMD 2210633

63.881

98.24

0.628
  cytR Vibrio cholerae C6706

65.138

95.894

0.625