Detailed information    

insolico Bioinformatically predicted

Overview

Name   rec2   Type   Machinery gene
Locus tag   ACKTSO_RS01260 Genome accession   NZ_AP035889
Coordinates   245629..247968 (+) Length   779 a.a.
NCBI ID   WP_407903127.1    Uniprot ID   -
Organism   Gallibacterium anatis strain SMUHGa01     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 240629..252968
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACKTSO_RS01235 (SMUG_02370) - 242157..242282 (-) 126 WP_407902716.1 hypothetical protein -
  ACKTSO_RS01240 (SMUG_02380) - 242251..242523 (-) 273 WP_407902717.1 hypothetical protein -
  ACKTSO_RS01245 (SMUG_02390) folK 242675..243157 (-) 483 WP_039092866.1 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase -
  ACKTSO_RS01250 (SMUG_02400) pcnB 243157..244665 (-) 1509 WP_039143289.1 polynucleotide adenylyltransferase PcnB -
  ACKTSO_RS01255 (SMUG_02410) dksA 244802..245251 (-) 450 WP_031204683.1 RNA polymerase-binding protein DksA -
  ACKTSO_RS01260 (SMUG_02420) rec2 245629..247968 (+) 2340 WP_407903127.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  ACKTSO_RS01265 (SMUG_02430) msbA 248041..249789 (+) 1749 WP_013745483.1 lipid A ABC transporter ATP-binding protein/permease MsbA -
  ACKTSO_RS01270 (SMUG_02440) lpxK 249810..250787 (+) 978 WP_039150306.1 tetraacyldisaccharide 4'-kinase -
  ACKTSO_RS01275 (SMUG_02450) - 250784..250981 (+) 198 WP_039080900.1 Trm112 family protein -
  ACKTSO_RS01280 (SMUG_02460) kdsB 250983..251759 (+) 777 WP_013745480.1 3-deoxy-manno-octulosonate cytidylyltransferase -

Sequence

Protein


Download         Length: 779 a.a.        Molecular weight: 90203.04 Da        Isoelectric Point: 9.1510

>NTDB_id=99257 ACKTSO_RS01260 WP_407903127.1 245629..247968(+) (rec2) [Gallibacterium anatis strain SMUHGa01]
MYLPFAWIFLTAFWGVFFTVVSLLALWLIRKKNQWGGVIISIIFSCCWCLFLIQQLITQAQYVQTLPKKQRAQIMIEKVL
HQRDYQTAIALLKFSDQDENYRFYLSWQTPQQLAAGQSWLGEITLKPLASRANFGGFQRQKWLYANHIVGYAVVKNAVFV
ADHPDLRERLLRHNLDLWQQQSQSELFLALGFGDKRFLSQETLQLFQQTGTAHLIAISGLHIGLVMLLGVALARSVQYFL
PAHRITPFLPLLFGGMCALLYSYLADFSIPTVRAIIALIFLLWLRFFRGYLNWWQCYVRCIAIFVLLDPLILLSDSFWLS
ALAVLCLLIWNHLFPLSVCSVRGKKLHQFGKITYYILALIHLQIGLFLLFTPITLFFFSGFNFFNLWINLWIVPIFSFVL
IPLILFSILTFDYFHSWALCQFIAQQCVEGLKIFKTGWHPVSELENLWISLIFLGLCLLWGMFCIRYAKYQRTKTDEHHW
LPTSTLFRLEVSALVERTDFQTILKIIGMILGIMLWQLGFYYYQQYRTLWTLEMLDVGQGMSILIRQNGKGVLYDTAASW
RGGSMAELEIIPYLQRQGIELEAIIVSHDDNDHSGGAEILLRYFPNATLITSSEKTYAGKTPEPCYQGVQWRWRDLNWQV
IAPYKVEKTAKNHQSCVMLINDGKYKVLLTGDLDKTAELQYLVHFPMIDILQVAHHGSRTSTSTTFLQKIAPKIALISAG
IGNQWHFPHQDIISRLRQFQVDTLVTATVGQIRLRFTKQGNIEVETARTSLQPWFKQLL

Nucleotide


Download         Length: 2340 bp        

>NTDB_id=99257 ACKTSO_RS01260 WP_407903127.1 245629..247968(+) (rec2) [Gallibacterium anatis strain SMUHGa01]
ATGTATTTGCCGTTTGCATGGATTTTTTTGACTGCATTTTGGGGTGTTTTTTTCACTGTCGTTTCATTGCTTGCCCTATG
GTTAATAAGAAAGAAAAATCAGTGGGGCGGTGTGATAATTTCAATAATATTTTCGTGTTGTTGGTGTCTGTTTTTGATAC
AACAACTCATTACGCAGGCTCAGTATGTGCAGACACTCCCGAAGAAACAGCGCGCGCAGATTATGATTGAAAAAGTTTTG
CATCAGCGGGATTATCAAACGGCAATTGCATTATTGAAGTTTTCGGATCAAGATGAGAACTATCGTTTTTATTTGAGTTG
GCAAACACCACAACAGCTGGCTGCCGGACAATCTTGGCTAGGAGAAATCACGCTAAAACCATTAGCGTCAAGAGCTAATT
TTGGTGGTTTTCAGCGTCAAAAATGGTTGTATGCAAATCATATTGTTGGCTATGCTGTTGTGAAAAATGCAGTTTTTGTT
GCAGATCATCCCGATTTGCGCGAGCGATTATTGCGGCATAATTTGGATTTATGGCAACAGCAATCACAGTCGGAATTATT
TCTTGCATTGGGATTTGGTGATAAGCGTTTTTTGAGTCAGGAAACGTTACAACTGTTTCAACAAACCGGAACAGCGCATT
TAATTGCGATTTCAGGCTTGCATATCGGTTTAGTAATGTTGTTGGGGGTGGCTTTAGCGCGTAGTGTGCAGTATTTCTTG
CCGGCGCATCGGATTACGCCGTTTTTGCCGCTATTATTCGGTGGAATGTGTGCGTTGTTATACAGTTATTTAGCCGATTT
TTCGATCCCGACTGTCCGAGCCATTATTGCATTGATCTTTCTATTGTGGCTGAGATTTTTTCGCGGTTATTTAAATTGGT
GGCAATGTTATGTGCGTTGTATCGCGATTTTTGTGCTATTGGATCCACTTATTCTGTTAAGTGATAGCTTTTGGCTATCC
GCATTGGCGGTGTTATGTTTATTGATATGGAATCATCTGTTTCCCTTATCTGTTTGCTCGGTTCGAGGAAAAAAACTCCA
TCAATTCGGTAAAATTACTTATTACATTTTGGCGCTTATTCATCTACAAATCGGACTGTTTCTGCTATTTACACCAATTA
CACTCTTCTTTTTTTCCGGTTTTAACTTCTTTAATTTATGGATTAATTTATGGATTGTGCCGATTTTCAGTTTTGTACTC
ATTCCATTAATTTTGTTCTCCATTTTAACGTTTGATTACTTCCACAGTTGGGCGTTATGCCAGTTTATTGCACAACAATG
TGTTGAGGGCTTAAAGATATTTAAAACTGGCTGGCATCCTGTTTCAGAGCTGGAAAATCTCTGGATAAGCTTGATTTTTC
TAGGCTTGTGTTTGCTTTGGGGAATGTTTTGTATTCGCTATGCTAAATATCAACGAACTAAAACGGATGAGCATCATTGG
TTGCCGACATCAACGCTATTCCGTTTAGAGGTGTCTGCTTTAGTTGAGCGTACCGATTTTCAAACTATTTTGAAAATAAT
AGGAATGATTTTAGGCATAATGCTATGGCAATTAGGCTTCTATTATTATCAACAATATCGCACTTTATGGACGCTGGAAA
TGTTGGATGTAGGGCAGGGAATGTCGATATTGATCCGGCAAAATGGCAAAGGCGTTTTGTATGATACAGCCGCTTCGTGG
CGTGGTGGCAGTATGGCTGAATTGGAAATTATTCCCTATTTGCAACGACAAGGTATTGAATTGGAAGCGATTATTGTGAG
TCACGATGATAATGATCATAGCGGTGGCGCTGAAATTTTGCTTCGTTATTTTCCGAATGCCACATTGATCACTTCGTCCG
AAAAAACATATGCCGGAAAAACGCCTGAACCCTGTTATCAAGGTGTTCAATGGCGTTGGCGTGATTTAAATTGGCAAGTG
ATAGCGCCGTATAAAGTAGAAAAAACAGCGAAAAATCATCAATCTTGCGTGATGTTGATCAATGATGGCAAATATAAGGT
CCTGTTAACCGGTGATCTGGATAAAACGGCGGAATTACAGTATTTAGTGCATTTCCCGATGATTGATATTTTGCAGGTGG
CGCATCACGGCAGCCGTACTTCGACCAGTACCACATTTTTGCAAAAAATAGCGCCAAAGATAGCATTAATTTCTGCCGGT
ATAGGCAATCAATGGCATTTTCCGCATCAGGATATTATTTCACGATTACGGCAATTTCAAGTTGATACGCTGGTAACGGC
AACCGTAGGACAGATTCGATTACGTTTTACCAAGCAGGGCAATATTGAAGTTGAAACGGCAAGAACTTCATTACAACCTT
GGTTTAAGCAGTTACTTTAA

Domains

Predicted by InterProScan.

Metallo-beta-lactamase superfamily (Lactamase_B)

(536-720)

Domain of unknown function (DUF4131) (DUF4131)

(12-154)

Competence protein (Competence)

(190-465)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rec2 Haemophilus influenzae Rd KW20

40.192

93.582

0.376

Multiple sequence alignment