Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   QMG46_RS10605 Genome accession   NZ_AP027042
Coordinates   2395769..2397151 (+) Length   460 a.a.
NCBI ID   WP_281852477.1    Uniprot ID   -
Organism   Dyella sp. GSA-30     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2390769..2402151
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QMG46_RS10575 (DYGSA30_20980) - 2391218..2391544 (+) 327 WP_281852472.1 iron-sulfur cluster assembly accessory protein -
  QMG46_RS10580 (DYGSA30_20990) rpsF 2391716..2392141 (+) 426 WP_281852473.1 30S ribosomal protein S6 -
  QMG46_RS10585 (DYGSA30_21000) rpsR 2392158..2392388 (+) 231 WP_266169630.1 30S ribosomal protein S18 -
  QMG46_RS10590 (DYGSA30_21010) rplI 2392497..2392946 (+) 450 WP_281852474.1 50S ribosomal protein L9 -
  QMG46_RS10595 (DYGSA30_21020) - 2393239..2394594 (+) 1356 Protein_2094 replicative DNA helicase -
  QMG46_RS10600 (DYGSA30_21030) alr 2394615..2395703 (+) 1089 WP_281852476.1 alanine racemase -
  QMG46_RS10605 (DYGSA30_21040) radA 2395769..2397151 (+) 1383 WP_281852477.1 DNA repair protein RadA Machinery gene
  QMG46_RS10610 (DYGSA30_21050) ccsA 2397175..2397972 (-) 798 WP_281852478.1 cytochrome c biogenesis protein CcsA -
  QMG46_RS10615 (DYGSA30_21060) ffh 2398104..2399486 (+) 1383 WP_281852479.1 signal recognition particle protein -
  QMG46_RS10620 (DYGSA30_21070) rpsP 2399672..2399926 (+) 255 WP_281852480.1 30S ribosomal protein S16 -
  QMG46_RS10625 (DYGSA30_21080) rimM 2399929..2400444 (+) 516 WP_281852481.1 ribosome maturation factor RimM -
  QMG46_RS10630 (DYGSA30_21090) trmD 2400464..2401237 (+) 774 WP_281852482.1 tRNA (guanosine(37)-N1)-methyltransferase TrmD -
  QMG46_RS10635 (DYGSA30_21100) rplS 2401270..2401653 (+) 384 WP_281852483.1 50S ribosomal protein L19 -

Sequence

Protein


Download         Length: 460 a.a.        Molecular weight: 48576.93 Da        Isoelectric Point: 7.4042

>NTDB_id=99252 QMG46_RS10605 WP_281852477.1 2395769..2397151(+) (radA) [Dyella sp. GSA-30]
MAKAKTAYVCTDCGAEHSKWQGQCIECGVWNTLSEVVLQPAVKSVGAARRTGYAGAVEPPKVTPLTEVALTADVRTCTGI
GELDRVLGGGLVDGSVVLIGGDPGIGKSTLLLQMLGTLGAQLSSVYVTGEESLAQVASRAQRLDLPLAPLHALAETCIER
ILEQTAAARPRVLVIDSIQTIWTELLTAAPGSVSQVRESAAKLTRFAKETGTSVFLVGHVTKEGGIAGPRVLEHMVDAVL
YFEGESGSRFRVLRAFKNRFGAVNELGVFAMSEKGLREVPNPSAIFLSAHGGPTSGSAVMVTREGTRPLLVEVQALVDQS
SLGNPRRVTLGLEQNRLAMLLAVLHRHGGIAAYDQDVFVNVVGGIRVQETAADLPVLLAVLSSLRDRPLPDKTIAFGEVG
LSGEIRPVPNGEERLKEAATHGFKRAIVPKANAPKKGKVGEMEVLGVERLSQAIDAARGD

Nucleotide


Download         Length: 1383 bp        

>NTDB_id=99252 QMG46_RS10605 WP_281852477.1 2395769..2397151(+) (radA) [Dyella sp. GSA-30]
ATGGCAAAAGCTAAAACCGCGTACGTCTGCACCGATTGCGGCGCCGAGCATTCCAAATGGCAGGGCCAGTGCATCGAGTG
CGGCGTGTGGAATACGTTGAGCGAAGTCGTGCTGCAGCCGGCGGTCAAATCGGTCGGCGCGGCACGGCGCACCGGTTATG
CCGGCGCCGTGGAACCTCCCAAAGTCACGCCGCTGACCGAAGTCGCGCTGACCGCTGATGTGCGCACGTGCACCGGCATC
GGTGAACTCGACCGGGTACTTGGCGGCGGCCTGGTCGACGGTTCGGTCGTGTTGATTGGTGGCGATCCCGGTATCGGCAA
ATCCACGTTGCTGTTGCAGATGCTCGGTACGCTGGGTGCGCAGCTGTCCAGCGTCTATGTCACCGGCGAAGAATCCCTGG
CCCAGGTCGCCTCGCGTGCCCAGCGCCTGGATCTGCCGCTCGCGCCTTTGCATGCACTGGCCGAAACCTGCATCGAGCGC
ATCCTCGAACAAACCGCGGCCGCACGTCCGCGCGTGCTGGTCATCGACTCCATCCAGACCATCTGGACCGAATTGCTCAC
CGCCGCGCCGGGCTCGGTCAGCCAGGTGCGCGAATCGGCTGCCAAACTGACGCGTTTTGCCAAGGAAACCGGTACGTCGG
TGTTTCTGGTCGGCCACGTGACCAAGGAGGGCGGCATCGCCGGCCCGCGCGTGCTCGAGCACATGGTCGATGCGGTGCTT
TATTTCGAAGGCGAATCGGGTAGCCGTTTTCGCGTGCTACGCGCGTTCAAGAACCGCTTCGGCGCGGTCAACGAACTGGG
TGTCTTCGCGATGAGCGAAAAGGGTCTGCGCGAGGTGCCCAATCCTTCGGCGATCTTCCTTTCCGCACATGGAGGCCCGA
CCTCCGGTAGCGCCGTGATGGTGACGCGCGAAGGCACGCGTCCATTGCTGGTCGAAGTGCAGGCCCTGGTCGATCAATCG
TCACTCGGCAACCCGCGTCGTGTGACGCTCGGTCTGGAACAGAATCGCCTGGCGATGTTGTTGGCCGTGCTGCACCGCCA
TGGAGGTATTGCAGCGTACGACCAGGACGTCTTCGTCAATGTGGTTGGCGGTATTCGCGTGCAGGAGACGGCCGCGGATT
TACCTGTGCTGCTGGCCGTATTGTCGAGCCTGCGCGATCGGCCGCTACCGGATAAGACCATTGCCTTCGGCGAAGTCGGC
TTGTCCGGCGAGATTCGTCCGGTGCCCAATGGTGAGGAACGGCTGAAAGAAGCCGCGACTCATGGCTTCAAGCGAGCGAT
CGTGCCCAAGGCGAACGCGCCGAAGAAGGGCAAGGTCGGCGAGATGGAAGTGCTGGGTGTGGAGCGGTTGTCGCAGGCGA
TCGATGCTGCTCGCGGCGATTGA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(349-432)

AAA domain (AAA_25)

(84-224)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

48.373

100

0.485
  radA Streptococcus mitis NCTC 12261

44.934

98.696

0.443
  radA Streptococcus pneumoniae Rx1

44.934

98.696

0.443
  radA Streptococcus pneumoniae D39

44.934

98.696

0.443
  radA Streptococcus pneumoniae R6

44.934

98.696

0.443
  radA Streptococcus pneumoniae TIGR4

44.934

98.696

0.443
  radA Streptococcus mitis SK321

44.934

98.696

0.443

Multiple sequence alignment