Detailed information NTG0992464

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: PAO1OR_RS06785
• Genome accession: NZ_LN871187
• Coordinates: 1456924..1457928 (+)
• Length: 334 a.a.
• NCBI ID: WP_003113871.1
• Uniprot ID: A0A0H2ZEU1
• Organism: Pseudomonas aeruginosa strain PAO1_Orsay
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 1451924..1462928

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
PAO1OR_RS06755 (PAO1OR1337)	fghA	1452016..1452867 (+)	852	WP_003113869.1	S-formylglutathione hydrolase	-
PAO1OR_RS06760 (PAO1OR1338)	ispF	1452938..1453411 (+)	474	WP_003098560.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
PAO1OR_RS06765 (PAO1OR1339)	truD	1453408..1454475 (+)	1068	WP_003113870.1	tRNA pseudouridine(13) synthase TruD	-
PAO1OR_RS06770 (PAO1OR1340)	surE	1454463..1455212 (+)	750	WP_003092341.1	5'/3'-nucleotidase SurE	-
PAO1OR_RS06775 (PAO1OR1341)	-	1455245..1455880 (+)	636	WP_003098558.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
PAO1OR_RS06780 (PAO1OR1342)	-	1455926..1456819 (+)	894	WP_003115226.1	peptidoglycan DD-metalloendopeptidase family protein	-
PAO1OR_RS06785 (PAO1OR1343)	rpoS	1456924..1457928 (+)	1005	WP_003113871.1	RNA polymerase sigma factor RpoS	Regulator
PAO1OR_RS06790 (PAO1OR1344)	fdxA	1458355..1458678 (-)	324	WP_003092272.1	ferredoxin FdxA	-
PAO1OR_RS06795 (PAO1OR1345)	mutS	1458745..1461312 (-)	2568	WP_003113873.1	DNA mismatch repair protein MutS	-
PAO1OR_RS06800 (PAO1OR1346)	-	1461438..1462445 (-)	1008	WP_003113874.1	TolB family protein	-

Sequence

Protein

• Length: 334 a.a.
• Molecular weight: 38235.38 Da
• Isoelectric Point: 5.0478

>NTDB_id=992464 PAO1OR_RS06785 WP_003113871.1 1456924..1457928(+) (rpoS) [Pseudomonas aeruginosa strain PAO1_Orsay]
MALKKEGPEFDHDDEVLLLEPGIMLDESSADEQPSPRATPKATTSFSSKQHKHIDYTRALDATQLYLNEIGFSPLLTPEE
EVHFARLAQKGDPAGRKRMIESNLRLVVKIARRYVNRGLSLLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIE
RAIMNQTRTIRLPIHVVKELNVYLRAARELTHKLDHEPSPEEIANLLEKPVAEVKRMLGLNERVTSVDVSLGPDSDKTLL
DTLTDDRPTDPCELLQDDDLSESIDQWLTELTDKQREVVIRRFGLRGHESSTLEEVGQEIGLTRERVRQIQVEALKRLRE
ILEKNGLSSDALFQ

Nucleotide

• Length: 1005 bp

>NTDB_id=992464 PAO1OR_RS06785 WP_003113871.1 1456924..1457928(+) (rpoS) [Pseudomonas aeruginosa strain PAO1_Orsay]
ATGGCACTCAAAAAAGAAGGGCCGGAGTTTGACCACGATGATGAAGTGCTCCTCCTGGAGCCCGGCATCATGCTGGACGA
GTCGTCTGCCGACGAGCAGCCTTCTCCCCGGGCAACTCCAAAAGCCACCACTTCCTTCTCTTCCAAACAACACAAGCACA
TCGACTACACGCGCGCGTTGGACGCAACGCAGCTGTATCTCAACGAAATCGGTTTCTCGCCCCTGTTGACGCCCGAAGAG
GAAGTCCACTTCGCTCGTCTGGCGCAGAAGGGCGATCCCGCTGGTCGGAAGCGGATGATCGAGAGCAACCTGCGGTTGGT
GGTGAAGATCGCCCGGCGCTATGTCAATCGCGGACTGTCCCTGCTCGACCTGATCGAGGAAGGCAACCTAGGCCTGATCC
GCGCCGTGGAGAAGTTCGATCCGGAGCGCGGATTCCGGTTCTCGACCTACGCCACCTGGTGGATCCGCCAGACCATCGAG
CGGGCCATCATGAACCAGACCCGGACCATTCGCTTGCCGATCCATGTGGTCAAGGAGCTCAACGTCTACCTGCGTGCGGC
GCGGGAACTGACCCACAAGCTCGACCACGAACCTTCACCCGAAGAAATCGCCAACCTGCTGGAGAAGCCGGTCGCCGAGG
TCAAGCGCATGCTCGGCCTGAACGAACGGGTGACTTCGGTAGACGTCTCTCTTGGTCCGGACTCGGACAAGACCCTGCTG
GATACGCTCACCGACGATCGCCCCACCGATCCGTGCGAGCTGCTGCAGGATGACGATCTCAGCGAAAGCATCGACCAGTG
GCTGACGGAACTCACCGACAAGCAGCGTGAGGTGGTGATTCGCCGCTTCGGCTTGCGCGGTCACGAAAGCAGCACGCTGG
AAGAGGTCGGCCAGGAAATCGGCCTGACCCGCGAGCGGGTTCGTCAGATCCAGGTCGAGGCGCTGAAGCGCCTGCGGGAG
ATTCTGGAGAAGAATGGCCTGTCGAGTGACGCGCTGTTCCAGTGA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (179-253)

• Sigma-70 region 2 (Sigma70_r2) (99-168)

• Sigma-70, region 4 (Sigma70_r4) (267-320)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (61-94)

3D structure

• AlphaFold DB: A0A0H2ZEU1

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	66.463	98.204	0.653