Detailed information    

insolico Bioinformatically predicted

Overview

Name   rarA   Type   Machinery gene
Locus tag   ACKTXI_RS31695 Genome accession   NZ_AP035884
Coordinates   7077571..7078938 (+) Length   455 a.a.
NCBI ID   WP_103512195.1    Uniprot ID   -
Organism   Streptomyces sp. CMC78     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 7072571..7083938
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACKTXI_RS31670 (SCMC78_64000) vraR 7073192..7073812 (-) 621 WP_030633275.1 response regulator Regulator
  ACKTXI_RS31675 (SCMC78_64010) - 7073812..7075098 (-) 1287 WP_408054590.1 sensor histidine kinase -
  ACKTXI_RS31680 (SCMC78_64020) - 7075056..7075877 (-) 822 WP_408054591.1 ABC transporter permease -
  ACKTXI_RS31685 (SCMC78_64030) - 7075874..7076731 (-) 858 WP_107058025.1 ABC transporter ATP-binding protein -
  ACKTXI_RS31690 (SCMC78_64040) - 7076868..7077506 (+) 639 WP_030085949.1 vitamin K epoxide reductase family protein -
  ACKTXI_RS31695 (SCMC78_64050) rarA 7077571..7078938 (+) 1368 WP_103512195.1 replication-associated recombination protein A Machinery gene
  ACKTXI_RS31700 (SCMC78_64060) - 7078958..7079659 (-) 702 WP_137232298.1 DUF2470 domain-containing protein -
  ACKTXI_RS31705 (SCMC78_64070) rpsD 7079851..7080465 (+) 615 WP_006123201.1 30S ribosomal protein S4 -
  ACKTXI_RS31710 (SCMC78_64080) - 7080483..7082696 (-) 2214 WP_397724915.1 ATP-binding protein -
  ACKTXI_RS31715 (SCMC78_64090) - 7082872..7083333 (+) 462 WP_319598899.1 DUF948 domain-containing protein -
  ACKTXI_RS31720 (SCMC78_64100) - 7083341..7083679 (+) 339 WP_137232302.1 DUF6167 family protein -

Sequence

Protein


Download         Length: 455 a.a.        Molecular weight: 48360.69 Da        Isoelectric Point: 6.1988

>NTDB_id=99243 ACKTXI_RS31695 WP_103512195.1 7077571..7078938(+) (rarA) [Streptomyces sp. CMC78]
MEPDLFTAAAEDRQEKDPSSSPLAVRMRPRTLDEVVGQQHLLKPGSPLRRLVEGSGGPAGASSVILWGPPGTGKTTLAYV
VSKATNKRFVELSAITAGVKEVRAVIESARRATGGFGKETVLFLDEIHRFSKAQQDSLLPAVENRWVTLIAATTENPYFS
IISPLLSRSLLLTLEPLTDDDLRSLLRRALTGERGLGGAVTLPEDAEAHLLRIAGGDARRALTALEAAAGAAIATGEAEI
TLETVEATVDRAAVKYDRDGDQHYDVASALIKSIRGSDVDAALHYLARMIEAGEDPRFIARRLMISASEDIGLADPTALP
TAVAAAQAVAMIGFPEAALTLSHATIALALAPKSNAATLAISAAQEDVRKGLAGPVPAHLRDGHYKGAAKLGHAQGYVYP
HDVQGGIAAQQYAPDAVRDRQYYTPTRYGAEARYADVVERVRERLGRSGESGEQT

Nucleotide


Download         Length: 1368 bp        

>NTDB_id=99243 ACKTXI_RS31695 WP_103512195.1 7077571..7078938(+) (rarA) [Streptomyces sp. CMC78]
GTGGAGCCCGACCTCTTTACCGCAGCCGCCGAAGACCGCCAGGAGAAGGACCCGTCCAGCAGCCCCCTCGCTGTCCGGAT
GCGGCCCCGCACCCTCGACGAGGTCGTCGGCCAGCAGCATCTGCTGAAGCCGGGCTCGCCGCTGCGCCGGCTCGTCGAGG
GGAGCGGCGGTCCGGCCGGTGCGTCGTCGGTGATCCTCTGGGGCCCGCCCGGCACCGGCAAGACGACCCTGGCGTACGTG
GTCAGCAAGGCCACCAACAAGCGCTTCGTGGAGCTCTCCGCGATCACCGCGGGCGTCAAGGAGGTCCGGGCCGTCATCGA
GAGCGCGCGCCGCGCCACCGGCGGCTTCGGCAAGGAGACCGTCCTCTTCCTGGACGAGATCCACCGCTTCTCCAAGGCCC
AGCAGGACTCCCTGCTCCCCGCAGTGGAGAACCGCTGGGTGACGCTCATCGCCGCCACCACGGAGAATCCGTACTTCTCC
ATCATCTCCCCGCTGCTCTCGCGCTCCCTGCTGCTCACCCTGGAGCCGCTGACCGACGACGACCTGCGCTCGCTGCTGCG
CCGTGCGCTGACCGGCGAGCGGGGTCTCGGCGGTGCGGTCACCCTGCCCGAGGACGCCGAGGCGCATCTGCTGCGGATCG
CGGGCGGCGACGCGCGCCGGGCCCTGACGGCGCTGGAGGCCGCGGCGGGCGCGGCCATCGCCACGGGGGAGGCGGAGATC
ACCCTGGAGACGGTCGAGGCGACCGTCGACCGGGCCGCCGTGAAGTACGACCGTGACGGCGACCAGCACTACGACGTGGC
CAGCGCGCTCATCAAGTCGATCCGCGGCTCCGACGTGGACGCCGCTCTGCACTACCTGGCCCGGATGATCGAGGCGGGGG
AGGACCCGCGGTTCATCGCCCGGCGGCTGATGATCTCGGCCAGCGAGGACATCGGCCTGGCCGATCCCACCGCGCTGCCG
ACCGCCGTGGCCGCCGCCCAGGCGGTGGCCATGATCGGTTTCCCGGAGGCGGCGCTGACCCTCAGCCACGCCACCATCGC
GCTGGCGCTCGCGCCCAAGTCCAACGCGGCGACGCTGGCGATCTCCGCGGCGCAGGAGGACGTCCGCAAGGGGCTCGCAG
GCCCCGTGCCGGCCCATCTGCGCGACGGTCACTACAAGGGCGCGGCCAAGCTCGGCCATGCCCAGGGCTATGTCTATCCG
CACGACGTACAGGGCGGCATCGCCGCCCAGCAGTACGCCCCGGACGCGGTCCGCGACCGGCAGTACTACACACCCACCCG
CTACGGCGCCGAGGCGCGGTACGCGGACGTCGTCGAGCGGGTCCGTGAACGCCTGGGCCGCTCCGGCGAGAGCGGCGAGC
AGACGTAG

Domains

Predicted by InterProScan.

AAA C-terminal domain (AAA_assoc_2)

(199-275)

MgsA AAA+ ATPase C terminal (MgsA_C)

(276-441)

ATPase family associated with various cellular activities (AAA) (AAA)

(64-168)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rarA Bacillus subtilis subsp. subtilis str. 168

44.78

94.725

0.424