Detailed information NTG0992363

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: PADK1_RS06920
• Genome accession: NZ_LN870292
• Coordinates: 1465600..1466604 (+)
• Length: 334 a.a.
• NCBI ID: WP_003113871.1
• Uniprot ID: A0A0H2ZEU1
• Organism: Pseudomonas aeruginosa DK1 substr. NH57388A
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 1460600..1471604

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
PADK1_RS06890 (PADK1_01343)	fghA	1460692..1461543 (+)	852	WP_004345459.1	S-formylglutathione hydrolase	-
PADK1_RS06895 (PADK1_01344)	ispF	1461614..1462087 (+)	474	WP_003098560.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
PADK1_RS06900 (PADK1_01345)	truD	1462084..1463151 (+)	1068	WP_004345456.1	tRNA pseudouridine(13) synthase TruD	-
PADK1_RS06905 (PADK1_01346)	surE	1463139..1463888 (+)	750	WP_004345454.1	5'/3'-nucleotidase SurE	-
PADK1_RS06910 (PADK1_01347)	-	1463921..1464556 (+)	636	WP_003098558.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
PADK1_RS06915 (PADK1_01348)	-	1464602..1465495 (+)	894	WP_003115226.1	peptidoglycan DD-metalloendopeptidase family protein	-
PADK1_RS06920 (PADK1_01349)	rpoS	1465600..1466604 (+)	1005	WP_003113871.1	RNA polymerase sigma factor RpoS	Regulator
PADK1_RS06925 (PADK1_01350)	fdxA	1467030..1467353 (-)	324	WP_003092272.1	ferredoxin FdxA	-
PADK1_RS06930 (PADK1_01351)	mutS	1467420..1469987 (-)	2568	WP_003113873.1	DNA mismatch repair protein MutS	-
PADK1_RS06940 (PADK1_01352)	-	1470113..1471120 (-)	1008	WP_003098486.1	TolB family protein	-

Sequence

Protein

• Length: 334 a.a.
• Molecular weight: 38235.38 Da
• Isoelectric Point: 5.0478

>NTDB_id=992363 PADK1_RS06920 WP_003113871.1 1465600..1466604(+) (rpoS) [Pseudomonas aeruginosa DK1 substr. NH57388A]
MALKKEGPEFDHDDEVLLLEPGIMLDESSADEQPSPRATPKATTSFSSKQHKHIDYTRALDATQLYLNEIGFSPLLTPEE
EVHFARLAQKGDPAGRKRMIESNLRLVVKIARRYVNRGLSLLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIE
RAIMNQTRTIRLPIHVVKELNVYLRAARELTHKLDHEPSPEEIANLLEKPVAEVKRMLGLNERVTSVDVSLGPDSDKTLL
DTLTDDRPTDPCELLQDDDLSESIDQWLTELTDKQREVVIRRFGLRGHESSTLEEVGQEIGLTRERVRQIQVEALKRLRE
ILEKNGLSSDALFQ

Nucleotide

• Length: 1005 bp

>NTDB_id=992363 PADK1_RS06920 WP_003113871.1 1465600..1466604(+) (rpoS) [Pseudomonas aeruginosa DK1 substr. NH57388A]
ATGGCACTCAAAAAAGAAGGGCCGGAGTTTGACCACGATGATGAAGTGCTCCTCCTGGAGCCCGGCATCATGCTGGACGA
GTCGTCTGCCGACGAGCAGCCTTCTCCCCGGGCAACTCCAAAAGCCACCACTTCCTTCTCTTCCAAACAACACAAGCACA
TCGACTACACGCGCGCGTTGGACGCAACGCAGCTGTATCTCAACGAAATCGGTTTCTCGCCCCTGTTGACGCCCGAAGAG
GAAGTCCACTTCGCTCGTCTGGCGCAGAAGGGCGATCCCGCTGGTCGGAAGCGGATGATCGAGAGCAACCTGCGGTTGGT
GGTGAAGATCGCCCGGCGCTATGTCAATCGCGGACTGTCCCTGCTCGACCTGATCGAGGAAGGCAACCTAGGCCTGATCC
GCGCCGTGGAGAAGTTCGATCCGGAGCGCGGATTCCGGTTCTCGACCTACGCCACCTGGTGGATCCGCCAGACCATCGAA
CGGGCCATCATGAACCAGACCCGGACCATTCGCTTGCCGATCCATGTGGTCAAGGAGCTCAACGTCTACCTGCGTGCGGC
GCGGGAACTGACCCACAAGCTCGACCACGAACCTTCCCCCGAAGAAATCGCCAACCTGCTGGAGAAGCCGGTCGCCGAGG
TCAAGCGCATGCTCGGCCTGAACGAACGGGTGACTTCGGTGGACGTCTCTCTTGGTCCGGACTCGGACAAGACCCTGCTG
GATACGCTCACCGACGATCGCCCCACCGACCCGTGCGAGCTGCTGCAGGATGACGATCTCAGCGAAAGCATCGACCAGTG
GCTGACGGAACTCACCGACAAGCAGCGTGAGGTGGTGATTCGCCGCTTCGGCTTGCGCGGGCACGAAAGCAGCACGCTGG
AAGAGGTCGGCCAGGAAATCGGCCTGACCCGCGAGCGGGTTCGTCAGATCCAGGTCGAGGCGCTGAAGCGCCTGCGGGAG
ATCCTGGAGAAGAATGGCCTGTCGAGTGACGCGCTGTTCCAGTGA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (179-253)

• Sigma-70 region 2 (Sigma70_r2) (99-168)

• Sigma-70, region 4 (Sigma70_r4) (267-320)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (61-94)

3D structure

• AlphaFold DB: A0A0H2ZEU1

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	66.463	98.204	0.653