Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC/pilC1   Type   Machinery gene
Locus tag   KKKWG1_RS06285 Genome accession   NZ_LN869922
Coordinates   1225081..1229160 (-) Length   1359 a.a.
NCBI ID   WP_019389114.1    Uniprot ID   -
Organism   Kingella kingae strain KWG1     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1220081..1234160
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KKKWG1_RS06255 (KKKWG1_1271) - 1221465..1221848 (+) 384 WP_019389115.1 hypothetical protein -
  KKKWG1_RS06260 (KKKWG1_1272) - 1222046..1222435 (-) 390 WP_060537066.1 hypothetical protein -
  KKKWG1_RS06265 (KKKWG1_1273) - 1222509..1222772 (+) 264 WP_060536905.1 transposase -
  KKKWG1_RS06270 (KKKWG1_1274) - 1222790..1223263 (+) 474 WP_060537067.1 IS5/IS1182 family transposase -
  KKKWG1_RS11560 (KKKWG1_1275) - 1223323..1223505 (-) 183 Protein_1273 transposase -
  KKKWG1_RS06275 (KKKWG1_1276) - 1223530..1224051 (-) 522 WP_366535107.1 IS5 family transposase -
  KKKWG1_RS11565 (KKKWG1_1277) - 1224030..1224293 (-) 264 WP_060536982.1 transposase -
  KKKWG1_RS11570 - 1224286..1224447 (-) 162 WP_285067147.1 hypothetical protein -
  KKKWG1_RS06280 (KKKWG1_1278) - 1224471..1224671 (-) 201 WP_154700187.1 hypothetical protein -
  KKKWG1_RS11575 (KKKWG1_1279) - 1224668..1224865 (-) 198 WP_154700188.1 transposase -
  KKKWG1_RS06285 (KKKWG1_1280) pilC/pilC1 1225081..1229160 (-) 4080 WP_019389114.1 PilC/PilY family type IV pilus protein Machinery gene
  KKKWG1_RS06290 (KKKWG1_1281) - 1229497..1231407 (-) 1911 WP_019389113.1 ATP-binding cassette domain-containing protein -

Sequence

Protein


Download         Length: 1359 a.a.        Molecular weight: 147598.28 Da        Isoelectric Point: 8.0352

>NTDB_id=992319 KKKWG1_RS06285 WP_019389114.1 1225081..1229160(-) (pilC/pilC1) [Kingella kingae strain KWG1]
MSLKYKKYNCNLKPLSLGVSLALSSFATMAADSPFAIAPQHLSSTATVKKTTVTTPYADIFKQQQSITNTTVRGMQGAKP
NIMLLLDDSGSMGAQVPGSGRTRQQILQSSLSQVVAKYGNQINWGLIAFNDQSSAFNLPLGTNYSTVVNSIKRFPANGLT
PTITSYIKAVDTLNKGIQYRCQKSYLVMLSDGDSNYPMYFEREAGVNARPGQMLTSYLRYPHWVYINREINKYDFWRELL
TKDGKLIDRNSSKYRGMCSTAYQKSNSNVKNWCSALPQQFVYYPYSGISDPDDTTTSAYRINYMNTWSGIFAKKYTEYPL
RDLTNDLDFLDSGSAYYTNTNLPSSGFGRYKKFFFNNQPILAPQTQYAGAMLSFFSEPINKIDLRIGGNDATGKSWDDSA
FPTQNITTFTIGFGNGLSESGLALLRGGASNIKLKDGTVQKAYYSASDQTALQKAFDAILAQVEAENPPPSNSNPIDLPP
TTNTLPISAPTAGVPNRQQSVMAETSYATSPPSATGASNSIPNMAASVFVPAGLKSSELRFYALNSKAQADTSSWLVADF
SQRKALIRTSSGVRWANDANLDNTFFLLSADTQTPQRTDEWNKALLPWTTRTVEGSDDSKIKALNYPTPYRIRPIPPTDS
PRSTGVDEYNMGDVLDTPIVATGKNGIAQGNRQEFLITAANDGMVYLFQSNPDVNAKNPYSLKLNYLPATMPRQTLTDTH
ATYYKDLAHEDYAKDSARPHLFMINGGITVRTTSAKSNRQNTFMVGALGQGGRGMYALNIGGKALDSGNAIGLNAEDSTW
NTSVPLYESNPNNSTDFSSLGYTVGYPQIGRIAKYNTDGSLSDNSLKTGVYYASFLSSGFSSLNASQETALYIQDALGVD
VGGGANTAATANGNTKGKLLAKVVVPGGVGGLASPTLLDVNRDGVYDFVFAGDYGGNMYRFDLRKIDLSNGTVTDGAVKK
IYSGSTTQPITSAPAISMQKNGRYVVAFGTGSDMYASDYNSTAEQAVYGIYQRFNERLDPIDINNPTAAETITPLTAGNL
LEQTLTTATAKMAEGTSNEKEVTVREGSTNAIESPSDKSKLAYGGWKVRLGNTTSVQDGERVVVTPTVIFGTLILSTRIY
KEKPVATVNNNAWSENNWQADGWVKVREDLDQNRTESPWSGWKEISTNSTSTTSSGDICTGTVNTSTKMQERERKVNYET
ITTYEKVQPSENQSSGWILVLNATNGGAVKVSSGTGVDFLGKYDASNFNPNDTAHSNTYFTVGLYSSSGLPNHTLLTNDS
NVHSLGSAMTRDGEARTNGEDGDLTPGGEKAKDDCFNNTDGNYVLTGNTATGIGATFSVVGRRCGKKIQIRRLSWREIF

Nucleotide


Download         Length: 4080 bp        

>NTDB_id=992319 KKKWG1_RS06285 WP_019389114.1 1225081..1229160(-) (pilC/pilC1) [Kingella kingae strain KWG1]
ATGAGTCTTAAATATAAAAAATATAATTGCAATCTTAAACCATTAAGCTTAGGGGTATCACTTGCCTTGTCCAGCTTTGC
GACAATGGCGGCTGATTCACCATTTGCAATTGCACCACAACATTTATCCAGTACGGCAACTGTAAAAAAAACCACAGTAA
CGACACCGTATGCCGATATTTTCAAACAGCAACAATCAATTACAAATACAACAGTGCGTGGTATGCAGGGTGCTAAACCC
AATATTATGCTACTATTGGATGACTCAGGAAGTATGGGTGCTCAAGTTCCAGGCTCTGGTCGAACACGACAACAAATATT
GCAAAGTTCCTTATCACAAGTAGTTGCTAAGTATGGTAATCAAATTAACTGGGGGCTTATTGCATTTAATGATCAAAGTT
CCGCATTTAACCTTCCATTAGGGACAAATTATTCAACCGTTGTTAATTCAATTAAAAGATTTCCTGCTAATGGTCTGACA
CCAACTATTACCAGCTACATAAAGGCTGTAGATACACTAAATAAAGGTATTCAATACCGTTGCCAAAAAAGTTATTTAGT
TATGTTATCTGATGGCGATTCTAACTATCCTATGTATTTTGAGCGAGAAGCAGGAGTTAATGCTAGACCTGGTCAGATGC
TTACTAGCTATTTAAGATATCCACACTGGGTTTATATTAACAGAGAAATTAATAAATACGATTTTTGGCGTGAACTCTTA
ACAAAAGATGGTAAATTAATTGATAGAAATTCATCCAAATATCGTGGAATGTGCAGTACTGCTTATCAAAAATCTAATTC
GAATGTTAAAAACTGGTGCAGTGCCTTACCTCAACAATTTGTTTATTATCCATATAGTGGTATTTCTGACCCTGATGATA
CTACCACCTCTGCTTATCGAATAAATTATATGAATACTTGGTCAGGTATTTTCGCAAAAAAATATACCGAATACCCATTG
CGGGATTTAACTAATGATTTAGATTTTTTGGATAGTGGTTCTGCATACTATACAAATACAAACCTACCTTCATCAGGATT
TGGAAGATATAAAAAATTTTTCTTCAACAATCAACCTATTTTGGCTCCCCAGACCCAATATGCGGGCGCGATGTTGTCAT
TTTTTAGCGAGCCAATCAACAAAATTGACCTACGAATAGGTGGTAATGATGCTACAGGTAAATCATGGGATGACTCAGCT
TTTCCAACACAAAACATTACAACCTTTACTATTGGTTTTGGTAATGGTCTGAGTGAGAGTGGTTTGGCATTATTGCGCGG
TGGTGCCAGCAATATTAAATTAAAAGATGGAACAGTACAAAAAGCGTACTATTCCGCTAGCGATCAAACAGCATTGCAAA
AGGCATTTGATGCTATTTTGGCGCAAGTTGAAGCGGAAAATCCACCACCTAGCAATAGTAATCCTATTGATTTGCCTCCC
ACTACTAATACCTTGCCAATTTCTGCACCTACGGCAGGTGTACCTAATCGCCAGCAAAGTGTGATGGCGGAGACGTCTTA
TGCCACTTCTCCTCCTAGTGCAACAGGTGCTAGCAATAGTATTCCTAATATGGCGGCATCGGTGTTTGTCCCTGCAGGGC
TAAAAAGTAGCGAATTGCGTTTTTATGCTTTAAATAGCAAAGCGCAAGCAGATACTTCGTCTTGGCTTGTGGCTGACTTT
TCGCAACGTAAAGCGTTAATCAGGACAAGTTCGGGTGTACGATGGGCAAATGATGCAAACTTGGATAATACGTTCTTTTT
ATTGTCTGCTGATACGCAAACGCCTCAACGGACTGATGAGTGGAATAAGGCATTATTGCCTTGGACAACTCGTACTGTTG
AAGGCAGCGATGACAGCAAAATTAAAGCGTTGAATTACCCAACGCCTTATCGTATTCGTCCAATTCCACCTACTGATAGT
CCACGTAGTACTGGCGTTGATGAATATAATATGGGCGATGTGTTGGATACACCGATTGTTGCGACTGGTAAAAATGGCAT
TGCGCAAGGTAATCGACAAGAGTTTTTGATTACAGCGGCCAATGATGGCATGGTGTACTTGTTCCAAAGTAATCCTGATG
TCAATGCAAAAAATCCGTATTCATTAAAATTGAATTACTTACCTGCGACAATGCCGCGCCAAACATTGACTGATACTCAT
GCTACTTATTACAAAGATTTAGCACACGAGGATTATGCAAAAGATTCTGCGCGTCCACATTTATTTATGATTAATGGTGG
TATTACGGTTCGTACGACTTCCGCTAAATCTAATCGTCAAAACACGTTTATGGTGGGGGCTTTGGGACAAGGCGGACGTG
GTATGTACGCACTCAATATTGGCGGTAAGGCTTTGGATTCTGGTAACGCCATCGGCTTAAATGCCGAAGATAGTACATGG
AATACATCCGTGCCTTTATATGAATCTAATCCAAATAATAGTACAGATTTTTCTTCATTAGGCTATACCGTTGGTTATCC
ACAAATTGGTCGTATTGCTAAATATAACACTGATGGCTCTTTATCAGACAATAGTTTGAAAACAGGTGTTTATTATGCTT
CTTTCTTATCAAGTGGCTTTTCTTCTCTTAATGCTAGTCAGGAAACCGCTCTGTATATTCAAGATGCGTTGGGTGTAGAT
GTTGGTGGTGGTGCTAATACTGCTGCTACAGCAAATGGCAATACAAAAGGTAAATTATTAGCGAAAGTGGTGGTTCCAGG
CGGCGTAGGTGGTTTGGCATCGCCAACATTACTTGATGTGAATCGAGATGGTGTGTATGACTTTGTCTTTGCGGGAGATT
ATGGTGGCAATATGTATCGCTTTGATTTGCGTAAAATTGATTTGTCTAATGGTACTGTTACCGACGGCGCTGTGAAGAAA
ATTTATTCTGGTTCTACAACACAACCAATTACAAGTGCTCCTGCTATTTCCATGCAAAAAAATGGACGGTATGTTGTGGC
ATTTGGTACGGGTAGTGATATGTATGCTAGCGATTATAATTCAACCGCTGAGCAAGCTGTATATGGTATTTATCAACGAT
TCAACGAGCGTTTGGATCCTATTGATATCAATAATCCTACTGCTGCTGAAACTATAACCCCTTTAACAGCTGGTAATTTG
TTGGAGCAAACATTAACCACAGCGACTGCCAAAATGGCAGAGGGTACTTCTAACGAAAAAGAAGTAACTGTTCGTGAAGG
CTCAACCAATGCAATTGAAAGTCCTAGTGATAAATCAAAATTAGCCTATGGTGGTTGGAAAGTGCGATTAGGTAACACGA
CATCTGTACAAGATGGTGAACGTGTTGTGGTTACCCCAACTGTGATTTTTGGTACCTTGATTCTTTCAACTCGCATCTAT
AAAGAAAAACCAGTTGCTACGGTCAATAATAATGCTTGGTCAGAAAATAATTGGCAAGCTGATGGTTGGGTTAAAGTAAG
GGAAGATTTAGACCAAAATCGCACAGAATCTCCATGGTCTGGTTGGAAAGAAATCAGCACGAACTCAACATCAACCACTA
GTTCAGGTGATATTTGTACGGGTACTGTGAATACCAGCACTAAAATGCAAGAGCGCGAAAGAAAGGTTAATTATGAAACC
ATTACCACTTATGAGAAAGTACAGCCAAGTGAGAATCAATCATCTGGATGGATTTTAGTATTGAATGCGACTAATGGCGG
TGCGGTAAAAGTATCATCTGGTACTGGAGTTGACTTTTTAGGTAAGTATGATGCTAGTAACTTTAATCCTAATGATACAG
CCCATAGTAATACCTATTTTACCGTAGGTTTGTACTCTTCCAGCGGTTTACCAAATCATACATTATTAACCAATGATTCT
AATGTTCATAGTTTAGGTTCTGCGATGACTCGTGATGGGGAAGCAAGAACCAATGGTGAAGATGGTGATTTAACTCCTGG
TGGTGAAAAGGCAAAGGATGATTGCTTTAATAATACTGACGGTAACTATGTATTGACAGGTAATACGGCAACAGGAATTG
GCGCAACATTTAGCGTTGTTGGTCGTCGTTGTGGTAAAAAAATACAAATCCGTCGTTTATCTTGGCGTGAGATTTTCTAA

Domains

Predicted by InterProScan.

von Willebrand factor type A domain (VWA_2)

(82-192)

Neisseria PilC beta-propeller domain (T4P_PilY1)

(667-1048)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC/pilC1 Kingella kingae strain KK03

100

100

1