Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA/sms   Type   Machinery gene
Locus tag   KKKWG1_RS05765 Genome accession   NZ_LN869922
Coordinates   1119082..1120458 (+) Length   458 a.a.
NCBI ID   WP_019389202.1    Uniprot ID   -
Organism   Kingella kingae strain KWG1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1114082..1125458
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KKKWG1_RS05745 (KKKWG1_1170) glnA 1114947..1116365 (+) 1419 WP_019389206.1 type I glutamate--ammonia ligase -
  KKKWG1_RS05750 (KKKWG1_1171) - 1116482..1117240 (+) 759 WP_019389205.1 ATP-binding cassette domain-containing protein -
  KKKWG1_RS05755 (KKKWG1_1172) proC 1117276..1118070 (-) 795 WP_019389204.1 pyrroline-5-carboxylate reductase -
  KKKWG1_RS05760 - 1118531..1118779 (+) 249 WP_003789854.1 hypothetical protein -
  KKKWG1_RS11525 (KKKWG1_1173) - 1118856..1118999 (+) 144 WP_019389203.1 hypothetical protein -
  KKKWG1_RS05765 (KKKWG1_1174) radA/sms 1119082..1120458 (+) 1377 WP_019389202.1 DNA repair protein RadA Machinery gene
  KKKWG1_RS05770 (KKKWG1_1175) - 1120717..1121055 (+) 339 WP_003789856.1 hypothetical protein -
  KKKWG1_RS05775 - 1121165..1121356 (-) 192 WP_019389201.1 hypothetical protein -
  KKKWG1_RS05780 (KKKWG1_1176) - 1121356..1124127 (-) 2772 WP_019389200.1 DNA methyltransferase -
  KKKWG1_RS11530 - 1124517..1125458 (-) 942 WP_366535106.1 TGS domain-containing protein -

Sequence

Protein


Download         Length: 458 a.a.        Molecular weight: 49417.12 Da        Isoelectric Point: 7.6114

>NTDB_id=992315 KKKWG1_RS05765 WP_019389202.1 1119082..1120458(+) (radA/sms) [Kingella kingae strain KWG1]
MAKAPKIQFQCTECGGTTPKWVGKCPHCGEWNTLSEQLTAPEPKNARFQSWAAETTQVQELSKVTAMEVPREATGMGELD
RVLGGGLVDGAVILLGGDPGIGKSTLLLQTIALMAKKRKVLYVSGEESAQQVALRSQRLGLNADGVNLLAEIRLEAIQAA
LKQHEPSVVVIDSIQTMYSDQITSAPGSVSQVRECAAQLTRIAKQMGIAMIFVGHVTKDGAIAGPRVLEHMVDTVLYFEG
DQHSNYRMIRAIKNRFGAANELGVFAMTETGLKGVSNPSAIFLASYRDDVAGSCVLVTQEGSRPLLVEIQALVDDAHGFT
PKRLTVGLEQNRLAMLLAVLNRHAGIACFDQDVFLNAVGGVKISEPAADLAVILAMLSSYRNKPLPEKIVAFGEIGLSGE
IRPVPRGQERLKEAEKLGFKRAIVPKANLPKNLKEFPSLKIQGVSSLQEAVNACRDWE

Nucleotide


Download         Length: 1377 bp        

>NTDB_id=992315 KKKWG1_RS05765 WP_019389202.1 1119082..1120458(+) (radA/sms) [Kingella kingae strain KWG1]
ATGGCAAAAGCCCCAAAAATCCAATTCCAATGCACCGAATGCGGTGGCACAACACCCAAATGGGTTGGCAAATGCCCGCA
TTGTGGCGAATGGAACACGCTTTCCGAACAGCTAACCGCACCCGAACCCAAAAACGCGCGTTTCCAATCATGGGCGGCGG
AAACCACGCAAGTGCAAGAATTATCCAAAGTTACCGCCATGGAAGTCCCACGCGAAGCCACTGGCATGGGCGAACTTGAT
CGCGTGTTGGGCGGCGGCTTGGTGGACGGTGCGGTCATTTTGCTCGGTGGCGACCCAGGTATTGGTAAATCTACATTGTT
GTTGCAAACCATTGCTTTAATGGCGAAAAAACGCAAAGTGCTGTATGTGTCGGGTGAGGAATCGGCGCAACAAGTGGCGT
TGCGTTCGCAGCGTTTGGGGCTGAATGCGGACGGTGTGAATTTGTTGGCGGAAATCCGTTTGGAGGCGATTCAGGCTGCC
TTAAAACAGCACGAGCCGTCTGTGGTCGTGATTGACTCGATTCAAACGATGTATTCTGACCAAATCACGTCCGCCCCTGG
CTCGGTGTCGCAGGTGCGCGAATGTGCGGCGCAACTGACGCGAATCGCTAAACAAATGGGCATTGCGATGATTTTTGTTG
GACACGTTACCAAAGACGGCGCGATTGCGGGTCCGCGCGTGTTGGAGCATATGGTGGACACGGTGCTGTATTTTGAGGGC
GACCAGCATTCCAATTACCGCATGATTCGGGCGATTAAAAACCGTTTTGGGGCGGCGAATGAATTGGGCGTGTTTGCGAT
GACGGAAACGGGCTTGAAAGGCGTTTCTAATCCGTCTGCGATTTTTTTGGCGAGCTATCGCGATGATGTGGCGGGTTCGT
GCGTGTTGGTTACGCAAGAGGGCAGTCGTCCGCTTTTGGTGGAAATTCAGGCACTTGTTGATGATGCGCACGGTTTCACG
CCGAAGCGTTTAACGGTGGGTTTGGAGCAAAACCGTCTTGCCATGTTGCTGGCGGTGCTGAATCGCCACGCTGGCATTGC
GTGTTTTGACCAAGATGTGTTTTTGAATGCGGTCGGCGGCGTGAAAATCAGCGAACCTGCGGCGGATTTGGCGGTAATTT
TGGCGATGTTGTCGAGCTATCGCAATAAGCCGCTGCCTGAAAAAATAGTGGCGTTTGGGGAAATTGGTTTGAGTGGCGAA
ATTCGTCCTGTGCCACGTGGGCAGGAGCGTTTGAAAGAAGCGGAGAAATTGGGCTTTAAACGGGCGATTGTGCCGAAAGC
GAATTTGCCGAAGAATTTAAAAGAGTTCCCAAGCCTGAAAATTCAAGGCGTAAGCAGCCTGCAAGAAGCGGTGAATGCTT
GTCGGGATTGGGAATAA

Domains

Predicted by InterProScan.

Subunit ChlI of Mg-chelatase (ChlI)

(361-428)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(9-36)

AAA domain (AAA_25)

(79-220)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA/sms Bacillus subtilis subsp. subtilis str. 168

50.33

99.345

0.5
  radA Streptococcus mitis SK321

48.786

98.908

0.483
  radA Streptococcus pneumoniae Rx1

48.246

99.563

0.48
  radA Streptococcus pneumoniae D39

48.246

99.563

0.48
  radA Streptococcus pneumoniae R6

48.246

99.563

0.48
  radA Streptococcus pneumoniae TIGR4

48.246

99.563

0.48
  radA Streptococcus mitis NCTC 12261

48.115

98.472

0.474