Detailed information    

insolico Bioinformatically predicted

Overview

Name   priA   Type   Machinery gene
Locus tag   KKKWG1_RS05310 Genome accession   NZ_LN869922
Coordinates   1017032..1019194 (+) Length   720 a.a.
NCBI ID   WP_060537044.1    Uniprot ID   -
Organism   Kingella kingae strain KWG1     
Function   DNA puliing through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1012032..1024194
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KKKWG1_RS05280 (KKKWG1_1066) - 1012676..1013083 (-) 408 WP_019389273.1 HIT domain-containing protein -
  KKKWG1_RS05285 (KKKWG1_1067) - 1013279..1014466 (-) 1188 WP_003789765.1 LysM peptidoglycan-binding domain-containing protein -
  KKKWG1_RS05290 (KKKWG1_1068) def 1014624..1015127 (+) 504 WP_019389272.1 peptide deformylase -
  KKKWG1_RS05295 (KKKWG1_1069) fmt 1015213..1016142 (+) 930 WP_019389271.1 methionyl-tRNA formyltransferase -
  KKKWG1_RS05300 (KKKWG1_1070) - 1016191..1016400 (+) 210 WP_019389270.1 hypothetical protein -
  KKKWG1_RS05305 (KKKWG1_1071) - 1016808..1016981 (+) 174 WP_003789769.1 PIN domain-containing protein -
  KKKWG1_RS05310 (KKKWG1_1072) priA 1017032..1019194 (+) 2163 WP_060537044.1 primosomal protein N' Machinery gene
  KKKWG1_RS05315 (KKKWG1_1073) - 1019281..1019673 (-) 393 WP_019389268.1 RidA family protein -
  KKKWG1_RS05320 (KKKWG1_1074) - 1019849..1021825 (+) 1977 WP_026036232.1 DNA topoisomerase IV subunit B -
  KKKWG1_RS11470 (KKKWG1_1075) - 1022031..1022240 (-) 210 WP_208103202.1 hypothetical protein -
  KKKWG1_RS05325 (KKKWG1_1076) - 1022302..1022565 (+) 264 WP_060536897.1 transposase -
  KKKWG1_RS05330 (KKKWG1_1077) - 1022583..1023089 (+) 507 WP_060537045.1 IS5/IS1182 family transposase -
  KKKWG1_RS05335 (KKKWG1_1078) tehB 1023408..1023995 (+) 588 Protein_1076 tellurite resistance methyltransferase TehB -

Sequence

Protein


Download         Length: 720 a.a.        Molecular weight: 80452.97 Da        Isoelectric Point: 8.1278

>NTDB_id=992310 KKKWG1_RS05310 WP_060537044.1 1017032..1019194(+) (priA) [Kingella kingae strain KWG1]
MIYHHIALNTILPLLTYSHHSALANGTRVVVKLRGKEQVGIVWASDITPDIAPNKILPIECVLDNYFTLPESWQDLVAFT
SRYYHYPIGQTAFTALPTLLKTPKVVELPCETVYYALNEIGQKQPAPPKHHAKKHQLWQALQTDWHDLAALKKIHPQAAQ
WLGDYQQSGWLHTKINAMPAIPASQHTLNAEQAAAAQAVKQAHGTFQTFLLHGITGSGKTEVYFDVMADTLSRGQSVLFL
LPEINLTPQLLSRIAQRFPNMPTAVLHSQTAAGQRGRDYLRAMLGQAKLVIGTRLAVFTPIPDLGLIVVDEEHDASFKQD
SELRYHARDLAIWRGKQAACTVILGSATPSLESWYKAQSQAYCLLSLTQRANPHAQLPRIAIADVRRIKLDNGFSPQALS
LLQQNYQQGGLSLVYLNRRGFAPALFCGDCGHTFGCPNCSAKMVLHQRAGQLRCHHCDFRQAIPRSCSDCGNQDLTAVGQ
GTQRVEETLRQWLPQANIARVDRDSTSRKSDWADLYAQIVNQQIDVLVGTQMLAKGHDFARLNLVLVLNADGSLFSSDFR
APERLFAELMQVSGRAGRAEQAAQVLIQTQLPDHEVFAAVKQQNYTLFADHELAQRGMIGLPPFGFQAAIRADAPKMADA
LQFLNQWRDQLAAHLPESVYQLGAVPMQMARLAERERAQIFVESQQRGDLHRALNMWVQALSQNRDAAIRWHIDVDYQEM

Nucleotide


Download         Length: 2163 bp        

>NTDB_id=992310 KKKWG1_RS05310 WP_060537044.1 1017032..1019194(+) (priA) [Kingella kingae strain KWG1]
ATGATTTACCACCACATCGCCCTAAACACCATTCTCCCCTTGCTCACTTATTCCCACCACAGCGCACTCGCCAATGGCAC
GCGCGTGGTGGTCAAACTGCGTGGCAAAGAACAAGTGGGCATTGTGTGGGCAAGCGACATCACGCCCGACATCGCCCCTA
ACAAAATTTTGCCGATTGAGTGCGTGTTGGACAACTATTTCACGCTGCCCGAAAGTTGGCAAGACTTGGTGGCGTTTACA
TCGCGCTACTACCATTATCCGATTGGGCAAACCGCGTTCACTGCGTTGCCCACTTTGCTCAAAACGCCAAAAGTCGTTGA
ATTGCCTTGCGAAACGGTTTATTACGCGCTCAATGAAATCGGGCAAAAGCAGCCTGCACCGCCCAAGCATCACGCCAAAA
AACACCAGTTGTGGCAAGCCTTGCAAACCGATTGGCACGATTTAGCCGCGCTCAAAAAAATTCATCCGCAAGCCGCACAA
TGGCTAGGCGACTACCAACAATCGGGCTGGTTGCACACCAAAATCAACGCCATGCCAGCCATTCCAGCATCGCAACACAC
GCTCAATGCCGAACAAGCCGCTGCCGCGCAAGCCGTTAAGCAGGCGCATGGCACATTTCAGACGTTTTTGTTACACGGCA
TCACGGGCAGCGGCAAAACCGAAGTGTATTTTGACGTGATGGCAGATACCTTGTCGCGTGGACAATCGGTGCTGTTTTTG
TTGCCCGAAATCAATTTAACGCCGCAATTATTGTCGCGCATTGCCCAGCGTTTTCCGAATATGCCGACCGCCGTGTTGCA
CAGCCAAACCGCCGCAGGACAGCGTGGACGCGATTATTTACGCGCCATGCTCGGTCAAGCCAAATTGGTCATTGGCACGC
GCTTGGCGGTGTTTACGCCGATTCCCGATTTGGGCTTGATTGTAGTGGACGAAGAACACGATGCGTCATTCAAACAAGAC
AGCGAATTGCGCTACCATGCGCGTGATTTGGCGATTTGGCGCGGGAAACAAGCAGCCTGCACTGTGATTTTAGGCAGTGC
AACGCCCAGTTTGGAATCGTGGTACAAAGCCCAAAGCCAAGCGTATTGTTTGTTGTCGCTGACTCAACGCGCCAACCCAC
ACGCGCAGTTGCCACGCATTGCGATTGCCGATGTGCGTCGCATCAAGCTAGACAATGGATTTTCGCCACAGGCTTTGTCG
TTGTTGCAACAGAATTATCAACAAGGCGGCTTGTCGCTGGTGTATTTGAATCGACGTGGTTTTGCGCCTGCTTTGTTTTG
TGGCGATTGCGGGCATACGTTTGGTTGTCCAAACTGTTCGGCAAAAATGGTGTTGCATCAACGCGCAGGGCAATTGCGCT
GTCATCATTGCGATTTTCGTCAAGCCATTCCACGCTCGTGCAGCGATTGCGGTAATCAAGATTTGACTGCTGTGGGGCAG
GGGACGCAGCGCGTAGAAGAAACCTTGCGCCAGTGGTTGCCACAGGCCAATATCGCGCGAGTGGACAGAGACAGCACTAG
TCGCAAATCCGATTGGGCGGACTTGTATGCACAAATCGTCAATCAACAAATAGACGTGTTGGTGGGAACGCAAATGCTCG
CCAAAGGACACGATTTTGCGCGATTGAATTTGGTGCTGGTGTTGAACGCAGACGGTTCGTTGTTTAGCAGCGATTTTCGC
GCTCCAGAACGCTTGTTTGCCGAATTGATGCAAGTGTCGGGCAGGGCAGGGCGTGCCGAACAAGCAGCGCAGGTGTTGAT
TCAAACCCAGTTGCCCGACCACGAAGTGTTCGCCGCAGTCAAACAGCAAAATTACACCTTGTTTGCCGACCACGAATTAG
CCCAGCGCGGCATGATTGGTTTGCCACCGTTTGGTTTTCAAGCTGCGATTCGTGCCGATGCGCCCAAAATGGCAGACGCG
CTGCAGTTTTTAAACCAATGGCGCGACCAGTTGGCAGCGCATTTGCCCGAATCGGTGTATCAGTTAGGCGCAGTGCCAAT
GCAAATGGCGCGATTGGCAGAACGAGAACGCGCACAAATTTTTGTGGAAAGTCAGCAGCGTGGCGATTTGCATCGCGCGT
TGAATATGTGGGTGCAGGCGTTATCGCAAAACCGTGATGCTGCGATTCGTTGGCATATTGATGTGGATTATCAGGAAATG
TGA

Domains

Predicted by InterProScan.

DEAD/DEAH box helicase (DEAD)

(196-352)

3DNA-binding domain (3BD) (PriA_3primeBD)

(14-97)

Primosomal protein N C-terminal domain (PriA_C)

(623-716)

PriA DNA helicase Cys-rich region (CRR) domain (Zn_ribbon_PriA)

(436-461)

Helicase conserved C-terminal domain (Helicase_C)

(514-579)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  priA Acinetobacter baumannii D1279779

36.302

100

0.374

Multiple sequence alignment