Detailed information    

insolico Bioinformatically predicted

Overview

Name   recB   Type   Machinery gene
Locus tag   KKKWG1_RS04185 Genome accession   NZ_LN869922
Coordinates   801781..805437 (+) Length   1218 a.a.
NCBI ID   WP_019389382.1    Uniprot ID   -
Organism   Kingella kingae strain KWG1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 796781..810437
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KKKWG1_RS04165 (KKKWG1_0851) - 797779..797982 (-) 204 WP_003785524.1 cold-shock protein -
  KKKWG1_RS04170 (KKKWG1_0852) clpS 798167..798469 (+) 303 WP_003789543.1 ATP-dependent Clp protease adapter ClpS -
  KKKWG1_RS04175 (KKKWG1_0853) clpA 798466..800739 (+) 2274 WP_019389383.1 ATP-dependent Clp protease ATP-binding subunit ClpA -
  KKKWG1_RS04180 (KKKWG1_0854) - 800866..801771 (+) 906 WP_003785531.1 hypothetical protein -
  KKKWG1_RS04185 (KKKWG1_0855) recB 801781..805437 (+) 3657 WP_019389382.1 exodeoxyribonuclease V subunit beta Machinery gene
  KKKWG1_RS04190 (KKKWG1_0856) - 805591..806229 (+) 639 WP_019389381.1 NYN domain-containing protein -
  KKKWG1_RS04195 (KKKWG1_0857) - 806244..807203 (+) 960 WP_060536990.1 glycosyltransferase family 52 -
  KKKWG1_RS04200 (KKKWG1_0858) - 807200..808180 (+) 981 WP_038313202.1 glycosyltransferase -
  KKKWG1_RS04205 (KKKWG1_0859) orn 808358..808906 (+) 549 WP_003785534.1 oligoribonuclease -
  KKKWG1_RS04210 (KKKWG1_0860) - 809050..809922 (+) 873 WP_038306893.1 YicC/YloC family endoribonuclease -

Sequence

Protein


Download         Length: 1218 a.a.        Molecular weight: 137963.99 Da        Isoelectric Point: 6.1426

>NTDB_id=992304 KKKWG1_RS04185 WP_019389382.1 801781..805437(+) (recB) [Kingella kingae strain KWG1]
MSHDFTLLNVPLVATNLIEASAGTGKTWNISALFARLVLLEQMPVDKILVVTFTNAATAELKTRLRDRLGEALRVLHKMQ
APFGATEVQAACEQYAPKSADFMSKLVEQALQKESRERLMVRLKAALSQFDHAAIYTIHSFCQRVLQDFAFYCQVPFQIE
LDEDSTPSPIAAQDFWREQVAHHEQLAQIVYRHQKNPQQQAAALASFVGRTYLHTRPTAYTLRDWQAANEGFVRAWQDTA
NQLDAIESAWEKLQPSLPKNSYQPDDLKSYIQQCYDWKSAGCLPDVNIILKLFFNSKNENKFSLATLTDKAKKDFKGKQD
PDALDCLSRTWGEWANHAQILSASEGDVLINVAMDLLHAIRQQNEADKQKQPARQFDDLLLDVFNALQTNRTHATALAQA
MSRTWQVVLIDEFQDTDPLQYGIFSRAFMQSSLHTENAPTVFMVGDPKQAIYNFRGADIFAYLQAAENVSPEQRYTLRTN
FRSHARLVNSVGALFAKPQPFVLPNLAYETVQAHRSNSHLSPQEAAVRVRWLNDLSLDKTEKTDALQHTSAQWCASEIAY
ALHRAGQGELRLKDKPLHAGDMAVLVRTRQEGAMVQRELKRLNVQSVLLSRDSVFQEDEARAVYALLAFFLNPQQTAHLV
YVLAGCLFGYTAQQLWALQQDERALSEWADKASVALQKWQKVGVYAAVQHFLQQHDVIQNLLAAGNDRTLTNLGQVLELL
AAEEESGRLPAALYQWLQQEIAATQDGDSNENRALRLESDEQLVKIVTMHASKGLQYPIVYCPFVWRGKGNKGDDWQVLQ
GESGSTLLHKNQMTDADKEQAQKEWLSEDLRLLYVALTRAEEQLVLYLAAHENTHHHPFYYLLDGDAHKTWSGAKVPAHA
YRQIWQQFVQKQNAETTSFEWDETPQAALLWTQNGKSSLHIQSDSDTVYQAQTVATRHYAPVVFSSFTALSSHQHAPEAL
ANTDEAERKWDIAVQAALPSETTSLPIQNDDIWDVAHFPRGAKAGVCLHELLEYFPFGQPAEKHSERIVRVLNRHQIADA
ENWLPAVCDMLDKVRQTPLANGIRLCDLSRQEWLNEMAFLFEIEQFNLVDVQNWCKQMNLSPECVQAALSLTFRQLSGFL
NGFIDTLVYTQNQALVIDYKSNYLADYSPASLNPEIAKHHYYLQALIYAIAMARYLRSRQCCPDVIAVRYVFLRGVDGSS
QQGVWACDVPVASLAVWL

Nucleotide


Download         Length: 3657 bp        

>NTDB_id=992304 KKKWG1_RS04185 WP_019389382.1 801781..805437(+) (recB) [Kingella kingae strain KWG1]
ATGAGCCACGATTTCACGCTCCTAAACGTTCCCCTAGTTGCCACTAATTTGATTGAAGCCAGCGCAGGTACAGGCAAAAC
ATGGAATATTTCTGCCCTGTTTGCCCGATTGGTGCTGCTGGAACAAATGCCTGTGGACAAAATTTTGGTCGTTACGTTTA
CCAACGCCGCCACCGCCGAACTCAAAACCCGATTGCGCGACCGTTTGGGCGAAGCCTTGCGCGTGTTGCACAAAATGCAA
GCTCCGTTTGGCGCAACCGAAGTGCAGGCTGCTTGTGAACAATACGCGCCCAAATCGGCAGATTTCATGAGCAAATTGGT
GGAACAAGCCCTGCAAAAAGAATCGCGCGAACGCTTAATGGTGCGACTCAAAGCCGCGTTGAGCCAGTTTGACCATGCCG
CCATTTACACCATTCACAGCTTTTGTCAGCGCGTGTTGCAAGATTTCGCGTTTTATTGCCAAGTCCCTTTTCAAATTGAA
TTGGACGAAGACAGCACGCCCAGCCCGATTGCGGCGCAAGACTTTTGGCGCGAACAAGTGGCGCACCACGAACAACTGGC
GCAGATTGTGTATCGCCATCAAAAAAATCCACAGCAACAAGCCGCAGCATTGGCTTCGTTTGTGGGGCGAACTTATTTGC
ACACGCGCCCCACGGCATACACTTTGCGCGATTGGCAAGCAGCAAACGAAGGTTTTGTACGCGCATGGCAAGACACGGCA
AATCAGCTTGATGCGATTGAAAGCGCGTGGGAAAAATTGCAACCGAGTTTGCCCAAAAATAGCTATCAGCCCGATGATTT
AAAAAGCTATATCCAACAATGCTATGACTGGAAAAGTGCAGGCTGCTTGCCCGATGTAAACATTATTTTGAAGCTGTTTT
TTAATAGCAAAAACGAAAACAAATTCAGCCTTGCCACGCTAACCGACAAAGCCAAAAAAGACTTCAAAGGCAAACAAGAC
CCTGATGCTTTGGACTGTTTAAGCCGCACTTGGGGCGAATGGGCAAACCACGCACAAATCTTGTCAGCCAGCGAAGGCGA
TGTGTTGATTAACGTGGCAATGGATTTGCTCCACGCTATTCGCCAGCAAAACGAAGCCGACAAACAAAAGCAGCCTGCAC
GTCAATTTGACGATTTATTACTAGACGTGTTCAACGCGCTGCAAACCAATCGCACCCATGCCACCGCGTTGGCACAAGCC
ATGTCGCGCACTTGGCAAGTGGTGCTGATTGACGAATTTCAAGACACCGACCCGTTGCAATATGGCATTTTTTCTCGCGC
CTTTATGCAAAGCAGCCTGCACACCGAAAACGCGCCCACCGTGTTTATGGTTGGCGACCCAAAACAGGCAATTTACAATT
TTCGTGGCGCGGACATTTTTGCCTATTTGCAAGCCGCAGAAAACGTGTCGCCCGAACAACGCTACACTTTGCGTACCAAT
TTCCGCAGCCATGCGCGATTAGTCAACAGCGTGGGTGCATTGTTCGCCAAACCGCAACCGTTTGTGTTGCCCAATTTGGC
ATACGAAACCGTGCAAGCGCATCGATCAAACAGCCATTTGTCGCCCCAAGAAGCGGCGGTGCGCGTGCGTTGGCTCAACG
ATTTAAGTTTGGATAAAACCGAAAAAACCGATGCCTTGCAACACACGTCCGCCCAATGGTGCGCCAGTGAAATTGCCTAT
GCCTTGCATCGCGCAGGGCAGGGCGAATTGCGTTTAAAAGACAAACCGCTACACGCTGGCGATATGGCTGTGCTGGTGCG
AACCCGCCAAGAAGGCGCAATGGTGCAGCGCGAACTCAAACGCCTAAATGTGCAAAGCGTGTTGTTGAGCCGTGATAGTG
TGTTCCAAGAAGACGAAGCGCGTGCCGTGTATGCTTTGTTGGCATTTTTCTTGAATCCGCAGCAAACGGCGCATTTGGTT
TATGTACTTGCAGGCTGCTTGTTTGGCTACACCGCGCAACAGTTGTGGGCTTTGCAACAAGATGAACGCGCATTAAGCGA
ATGGGCAGACAAAGCGAGCGTTGCCTTGCAAAAATGGCAAAAAGTGGGCGTGTATGCAGCGGTGCAACATTTTTTGCAGC
AACACGATGTCATCCAAAACCTGCTCGCTGCTGGCAACGACCGCACTTTGACCAATTTGGGGCAAGTGCTGGAATTGCTG
GCTGCCGAAGAAGAAAGCGGACGTTTGCCAGCCGCCTTGTATCAATGGTTGCAACAAGAAATCGCTGCCACGCAAGATGG
CGACAGCAACGAAAACCGCGCCTTGCGACTGGAAAGCGATGAGCAACTGGTCAAAATTGTAACCATGCATGCATCAAAAG
GCTTGCAATATCCGATTGTGTATTGCCCGTTTGTGTGGCGTGGCAAAGGCAACAAGGGCGACGATTGGCAAGTGTTGCAA
GGCGAATCGGGCAGCACTTTGTTGCACAAAAACCAAATGACCGATGCCGACAAAGAACAAGCGCAAAAAGAGTGGTTGTC
GGAAGATTTGCGTTTGCTGTATGTGGCTTTGACTCGCGCCGAAGAGCAATTGGTGCTGTATTTGGCGGCACACGAAAACA
CGCATCATCACCCGTTTTATTATTTGTTAGACGGTGATGCGCACAAAACATGGTCTGGTGCAAAAGTGCCAGCGCACGCC
TATCGCCAAATTTGGCAACAATTCGTACAGAAGCAAAACGCAGAAACTACCAGCTTTGAATGGGACGAAACACCGCAGGC
TGCTTTGTTGTGGACGCAAAACGGCAAAAGCAGCCTGCACATTCAGTCGGATAGCGACACGGTTTATCAAGCGCAAACCG
TTGCCACGCGCCATTATGCGCCAGTTGTGTTTAGCAGTTTTACCGCGTTGAGTTCGCATCAACACGCGCCCGAAGCGTTG
GCAAACACAGACGAAGCCGAGCGCAAATGGGACATTGCGGTGCAGGCTGCTTTACCCAGCGAAACGACATCGCTACCAAT
CCAAAACGATGATATTTGGGACGTGGCGCATTTTCCGCGTGGCGCAAAAGCAGGCGTGTGTTTGCACGAATTGCTGGAAT
ATTTTCCGTTTGGTCAGCCAGCCGAAAAACACAGCGAGCGCATTGTGCGCGTGCTGAACCGCCATCAAATTGCCGATGCC
GAAAACTGGCTGCCTGCCGTGTGTGATATGCTAGACAAAGTGCGCCAAACACCGCTGGCAAACGGCATTCGTTTGTGCGA
TTTGTCGCGCCAAGAGTGGCTTAACGAAATGGCATTTTTGTTTGAAATAGAACAATTTAATTTGGTTGATGTGCAAAACT
GGTGCAAGCAAATGAACTTGTCACCCGAATGTGTGCAGGCTGCTTTGTCGCTCACGTTCCGCCAGTTAAGCGGTTTTTTG
AATGGCTTTATCGACACGCTGGTTTACACGCAAAATCAAGCATTGGTGATTGACTACAAATCCAATTATTTGGCGGATTA
TTCGCCTGCGTCGCTGAATCCAGAAATCGCCAAGCATCACTATTATTTGCAAGCCTTGATTTATGCGATTGCTATGGCGC
GTTATCTTCGTAGCCGCCAATGTTGCCCCGATGTGATTGCGGTACGCTATGTGTTTTTACGCGGCGTGGACGGCAGCAGC
CAACAAGGCGTGTGGGCGTGTGATGTGCCTGTGGCTTCGTTGGCGGTGTGGTTGTGA

Domains

Predicted by InterProScan.

UvrD/REP helicase N-terminal domain (UvrD-helicase)

(15-468)

PD-(D/E)XK nuclease superfamily (PDDEXK_1)

(1081-1194)

UvrD-like helicase C-terminal domain (UvrD_C)

(475-847)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recB Neisseria meningitidis MC58

43.331

100

0.44
  recB Neisseria gonorrhoeae strain FA1090

42.985

100

0.435
  recB Neisseria gonorrhoeae MS11

42.985

100

0.435