Detailed information    

insolico Bioinformatically predicted

Overview

Name   recC   Type   Machinery gene
Locus tag   KKKWG1_RS03995 Genome accession   NZ_LN869922
Coordinates   763367..766807 (+) Length   1146 a.a.
NCBI ID   WP_060536989.1    Uniprot ID   -
Organism   Kingella kingae strain KWG1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 758367..771807
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KKKWG1_RS03960 (KKKWG1_0805) iscX 759233..759430 (-) 198 WP_003785505.1 Fe-S cluster assembly protein IscX -
  KKKWG1_RS03965 (KKKWG1_0806) metZ 759644..760822 (+) 1179 WP_019389416.1 O-succinylhomoserine sulfhydrylase -
  KKKWG1_RS03970 (KKKWG1_0807) - 760905..761102 (+) 198 WP_003785502.1 DUF2788 domain-containing protein -
  KKKWG1_RS03975 (KKKWG1_0808) - 761191..761736 (+) 546 WP_019389415.1 septation protein A -
  KKKWG1_RS03980 (KKKWG1_0809) - 761733..762026 (+) 294 WP_193365648.1 YciI family protein -
  KKKWG1_RS03985 (KKKWG1_0810) - 762023..762295 (+) 273 WP_019389413.1 BolA family protein -
  KKKWG1_RS03990 (KKKWG1_0811) - 762311..763192 (+) 882 WP_019389412.1 peptidyl-prolyl cis-trans isomerase -
  KKKWG1_RS03995 (KKKWG1_0812) recC 763367..766807 (+) 3441 WP_060536989.1 exodeoxyribonuclease V subunit gamma Machinery gene
  KKKWG1_RS04000 (KKKWG1_0814) - 767099..767407 (-) 309 WP_003789511.1 hypothetical protein -
  KKKWG1_RS04005 (KKKWG1_0815) - 767435..768370 (-) 936 WP_003789510.1 phosphatidate cytidylyltransferase -
  KKKWG1_RS04010 (KKKWG1_0816) - 768407..769072 (-) 666 WP_019389407.1 lysophospholipid acyltransferase family protein -

Sequence

Protein


Download         Length: 1146 a.a.        Molecular weight: 131056.10 Da        Isoelectric Point: 5.5575

>NTDB_id=992302 KKKWG1_RS03995 WP_060536989.1 763367..766807(+) (recC) [Kingella kingae strain KWG1]
MLHLYQSNQLENLAQMMLNLHQSQPLSHPLQAEYILVQSQGMRRYINQYWAQHSPIAANLHFELPAQLAWQLMREALPNA
PKLSPFSSDVMQWRLLQLFQSRHFAEDSELASAQEMLRDYVQQGEMSAYQLARQLADVFDQYLMYRPDWIEAWSNQQNVA
ELSQREDCAQEQQWQAAIWRELLRDEQRAPHRAQMQRVLMDSLANQTIRRLPERILMFGITALAPSHLQLLQEIAKQRDV
HIFALNPSAMYWGDLLEPAQILQQTDDVDLSLQGHPLLASWGKQGRNFFNDLSVAEARQDEAHQQFAEQAKSPNLLHSLQ
YQIQQLVLPEQAHDDDWLARHDAYLRESVLQQNLDVGEYYVRHVQQDLSPEQKAMVQLNADSSLHIHSAHSSLRELQILK
DRILLALAQNPTWQPHDIAVLTPNIEPYSPFIDSVFGEYSDAPLPYSLADVKLTRKQPALDALAQALDLLNSRFEAEQVL
ALLNTEPVLQQWHINRADLPLLHSAVAELNIRWGSDASERAQYGDANNLFTWQQGLDRLVLGWLQPAQSGATWQNIAPQT
SHPDHLPILANFVAFVRFLSHTKQQWQQPASVAQWCERLQQFTQTLLGDGDTTQQAALQTWRKALDDWQEQAEIAQFSEP
LSSPIACQHIRRSLDEPTDAGLLRGGITFCSMVPMRSLPFKMLCLLGLNDGTFPRNTKAAPFDLIAKQPRKGDRSRRDDD
RYLFLEAILSAREQLYLSYIGRDIRSDAERAPSTLLSELVDTISALSDVPSSDLYQHWVTHHPLQAFSRRYFASAEQDNP
HLSSTRSDFAHALNLAQQGQTHQAKNFVDWRNTDNDPATFIRQKDFLRFWRNPVRHWLHHTLNWQSPYFTGNHESEEPFL
SDQPRRLDDAYVQARMHNQSFDDTAAYLRAQSLLPAGELGKQEAKSYEIAAKALDTDLLNSPRLPHRSGELACGQGSLHF
DLSHNHEAGQILLARDFLSDNNTHGKLTSPDQVQLLLQHLIYCAATPDHEPVARQTHYVGLTQQMSLPPMSQAQAQAALS
VWLAYYAQGQQAPLPYFARVNWAAAMALYTKKDANWLAAQDAAADKYHAGYFGMAQEDYPEVQLVFGRDPDAEPPYTLPE
FQQITEDLFEPLQVCLQAFTDNKDKK

Nucleotide


Download         Length: 3441 bp        

>NTDB_id=992302 KKKWG1_RS03995 WP_060536989.1 763367..766807(+) (recC) [Kingella kingae strain KWG1]
ATGCTGCACCTATATCAATCCAACCAACTCGAAAACTTGGCGCAGATGATGTTAAACCTACATCAATCGCAGCCTTTGTC
GCACCCGTTGCAGGCGGAATACATTTTGGTGCAAAGCCAAGGCATGCGCCGCTACATCAACCAATATTGGGCGCAGCATT
CGCCCATTGCCGCCAATTTGCACTTTGAATTGCCCGCACAACTGGCGTGGCAACTGATGCGCGAAGCCTTGCCCAATGCG
CCCAAATTAAGCCCGTTTTCCAGCGACGTGATGCAATGGCGATTGCTGCAATTATTCCAATCGCGCCATTTTGCGGAAGA
CAGCGAACTGGCATCGGCACAAGAAATGTTGCGCGATTATGTGCAGCAGGGCGAAATGTCGGCGTATCAGTTAGCGCGAC
AGCTTGCCGATGTGTTCGACCAATATTTGATGTATCGCCCCGATTGGATTGAAGCGTGGTCAAATCAACAAAATGTAGCG
GAATTGTCGCAGCGCGAAGATTGCGCCCAAGAACAGCAATGGCAAGCGGCAATTTGGCGCGAATTGTTGCGCGATGAACA
ACGCGCTCCGCATCGAGCGCAAATGCAGCGCGTGTTAATGGATTCGTTGGCAAATCAAACAATTCGCAGGCTGCCCGAGC
GGATTTTAATGTTTGGGATTACTGCCCTTGCGCCATCGCATTTGCAACTGTTGCAAGAAATCGCCAAACAGCGCGATGTA
CATATTTTTGCGCTCAACCCCAGTGCGATGTATTGGGGCGATTTGCTTGAACCTGCACAAATTTTGCAGCAAACCGATGA
CGTGGATTTGTCGTTGCAAGGACACCCATTGCTGGCATCGTGGGGCAAACAAGGGCGCAATTTTTTCAACGATTTGAGCG
TTGCCGAAGCGCGTCAAGATGAAGCGCATCAGCAATTTGCCGAGCAAGCGAAGTCGCCCAATTTACTGCACAGTTTGCAA
TACCAAATCCAGCAGCTAGTATTGCCCGAACAGGCGCACGATGACGATTGGTTGGCACGGCACGATGCTTATTTGCGCGA
ATCGGTGTTGCAACAAAATTTGGACGTAGGCGAATACTATGTCCGCCACGTTCAGCAAGATTTATCGCCCGAACAAAAAG
CGATGGTGCAGCTCAACGCCGATAGCAGCCTGCACATTCACAGCGCACACAGTTCGTTGCGCGAATTGCAGATTTTAAAA
GACCGCATTTTGCTTGCTTTGGCGCAAAATCCGACTTGGCAGCCACACGATATTGCCGTACTCACGCCCAATATTGAGCC
ATACTCGCCGTTTATTGACAGCGTGTTTGGCGAATATTCCGATGCGCCTTTGCCGTATTCGCTTGCCGATGTCAAACTCA
CGCGCAAGCAGCCTGCACTTGATGCTTTGGCGCAAGCGTTGGATTTGCTCAACAGCCGTTTTGAAGCGGAACAAGTGTTG
GCATTGCTCAACACCGAACCCGTGTTGCAACAATGGCACATCAACCGCGCCGACTTGCCCTTGCTGCACAGCGCGGTTGC
CGAACTCAATATCCGCTGGGGCAGCGATGCCAGCGAACGCGCCCAATATGGCGATGCCAATAATTTGTTTACATGGCAAC
AAGGGCTAGACCGCTTAGTTTTGGGCTGGTTGCAGCCTGCACAATCAGGCGCAACGTGGCAAAACATCGCGCCCCAAACC
AGCCACCCCGACCATTTGCCGATTTTGGCGAATTTTGTCGCGTTTGTGCGATTCCTGTCCCACACCAAACAACAATGGCA
ACAACCAGCCAGCGTGGCGCAATGGTGCGAACGCTTGCAACAGTTCACACAAACCTTATTGGGCGATGGCGACACCACGC
AACAAGCCGCCTTGCAAACCTGGCGCAAAGCCTTGGACGATTGGCAAGAGCAAGCCGAAATCGCCCAATTTAGCGAACCG
TTATCCAGCCCCATTGCCTGCCAACACATTCGCCGTAGCTTGGACGAACCAACCGATGCAGGCTTGTTGCGCGGTGGCAT
CACGTTTTGCAGCATGGTTCCGATGCGCTCTTTGCCGTTTAAGATGTTGTGTTTATTGGGATTGAATGACGGCACGTTTC
CGCGCAACACCAAAGCCGCACCGTTTGACTTAATCGCCAAACAACCGCGCAAAGGCGACCGTTCGCGCCGTGATGACGAC
CGTTATTTGTTTTTGGAAGCGATTTTATCGGCACGCGAACAGCTTTATTTGTCCTACATTGGGCGCGATATTCGCAGCGA
TGCCGAACGCGCACCGTCCACGCTGTTGAGCGAATTGGTGGACACGATTTCCGCTTTGAGCGATGTGCCAAGCAGTGATT
TGTATCAGCATTGGGTTACGCATCACCCCTTGCAGGCGTTTTCGCGCCGATATTTTGCATCTGCCGAACAGGACAACCCA
CACTTATCCAGCACGCGCAGCGACTTTGCCCACGCGCTGAATTTGGCGCAACAAGGTCAAACGCATCAAGCCAAAAATTT
TGTCGATTGGCGCAACACAGACAACGACCCAGCCACTTTTATCCGCCAAAAAGATTTTTTACGCTTTTGGCGCAACCCCG
TTCGCCATTGGTTGCACCACACTTTGAACTGGCAAAGCCCGTATTTTACAGGCAACCACGAAAGCGAAGAGCCATTTTTG
TCCGACCAACCGCGCCGTTTGGACGATGCCTATGTGCAGGCGCGAATGCATAATCAATCGTTTGATGACACGGCGGCTTA
TCTTCGCGCCCAAAGTTTGTTGCCAGCAGGCGAACTGGGTAAGCAAGAAGCAAAAAGTTATGAAATTGCAGCAAAGGCGT
TGGATACCGATTTGCTTAATAGTCCGCGTTTGCCGCATCGTTCGGGCGAATTAGCTTGCGGACAGGGCAGCCTGCACTTT
GATTTGTCGCACAACCACGAAGCAGGGCAAATCTTGTTGGCGCGTGATTTTTTGAGCGATAACAACACGCACGGCAAATT
GACATCGCCCGACCAAGTGCAACTGTTGCTGCAACATTTGATTTATTGCGCGGCAACGCCCGACCATGAACCTGTGGCAC
GGCAAACGCATTATGTGGGCCTGACACAGCAAATGAGCTTGCCACCGATGTCGCAAGCGCAAGCGCAGGCTGCTTTGAGC
GTGTGGCTGGCTTATTACGCGCAAGGGCAGCAAGCACCGTTGCCATATTTTGCGCGAGTAAACTGGGCGGCGGCGATGGC
GTTGTACACCAAAAAAGATGCCAACTGGTTGGCAGCGCAAGACGCAGCGGCAGACAAATACCACGCTGGCTATTTTGGCA
TGGCGCAGGAAGATTACCCCGAAGTACAGCTGGTGTTTGGGCGCGACCCCGATGCCGAACCGCCATACACCTTGCCCGAA
TTTCAGCAGATAACGGAAGATTTGTTTGAGCCATTGCAGGTGTGTTTGCAGGCGTTTACGGACAATAAAGATAAGAAATA
G

Domains

Predicted by InterProScan.

Exodeoxyribonuclease V, gamma subunit (RecC_N)

(2-325)

RecC C-terminal domain (RecC_C)

(841-1067)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recC Neisseria gonorrhoeae strain FA1090

44.493

99.04

0.441
  recC Neisseria gonorrhoeae MS11

44.405

99.04

0.44