Detailed information NTG0992296

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: AAHV54_RS22210
• Genome accession: NZ_CP153910
• Coordinates: 4533403..4534203 (+)
• Length: 266 a.a.
• NCBI ID: WP_023322076.1
• Uniprot ID: -
• Organism: Klebsiella variicola subsp. variicola strain KP_NORM_URN_109342
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 4528403..4539203

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
AAHV54_RS22175 (AAHV54_22165)	gspH	4528556..4529071 (+)	516	WP_008807378.1	type II secretion system minor pseudopilin GspH	-
AAHV54_RS22180 (AAHV54_22170)	gspI	4529068..4529433 (+)	366	WP_004894160.1	type II secretion system minor pseudopilin GspI	-
AAHV54_RS22185 (AAHV54_22175)	gspJ	4529430..4530026 (+)	597	WP_008807379.1	type II secretion system minor pseudopilin GspJ	-
AAHV54_RS22190 (AAHV54_22180)	gspK	4530023..4531003 (+)	981	WP_077263535.1	type II secretion system minor pseudopilin GspK	-
AAHV54_RS22195 (AAHV54_22185)	gspL	4530996..4532192 (+)	1197	WP_032731629.1	type II secretion system protein GspL	-
AAHV54_RS22200 (AAHV54_22190)	-	4532185..4532670 (+)	486	WP_012968921.1	type II secretion system protein M	-
AAHV54_RS22205 (AAHV54_22195)	-	4532660..4533406 (+)	747	WP_072124978.1	type II secretion system protein N	-
AAHV54_RS22210 (AAHV54_22200)	pilD	4533403..4534203 (+)	801	WP_023322076.1	A24 family peptidase	Machinery gene
AAHV54_RS22215 (AAHV54_22205)	hrpB	4534250..4536679 (-)	2430	WP_072124979.1	ATP-dependent helicase HrpB	-
AAHV54_RS22220 (AAHV54_22210)	thpR	4536752..4537288 (+)	537	WP_008807387.1	RNA 2',3'-cyclic phosphodiesterase	-
AAHV54_RS22225 (AAHV54_22215)	sfsA	4537288..4538004 (+)	717	WP_008807388.1	DNA/RNA nuclease SfsA	-
AAHV54_RS22230 (AAHV54_22220)	dksA	4538167..4538622 (+)	456	WP_007749299.1	RNA polymerase-binding protein DksA	-

Sequence

Protein

• Length: 266 a.a.
• Molecular weight: 29445.19 Da
• Isoelectric Point: 8.7151

>NTDB_id=992296 AAHV54_RS22210 WP_023322076.1 4533403..4534203(+) (pilD) [Klebsiella variicola subsp. variicola strain KP_NORM_URN_109342]
MTILTALSLHFPLVWYGFLLLFGLALGSFYNVVIYRLPRMLTQTADDERITLSTPGSSCPQCRQPIAWRDNIPLLSFLWL
GRRARCCQAPIAWSYPLTELATGLLFILAGALLAPGLPLAGGLLLLSFLLMLARIDARTQLLPDRLTLPLLWAGLLFNLN
EVYIALPDAVAGAMAGYLALWSVYWLFRLLTGKEALGYGDFKLLAALGAWCGWQVLPQVLLLASACGLVWTLLQRLWTRQ
SLQQPLAFGPWLALAGGGIFLWQQMV

Nucleotide

• Length: 801 bp

>NTDB_id=992296 AAHV54_RS22210 WP_023322076.1 4533403..4534203(+) (pilD) [Klebsiella variicola subsp. variicola strain KP_NORM_URN_109342]
ATGACGATATTAACGGCATTATCGCTGCACTTTCCCCTTGTCTGGTATGGCTTCCTGCTGCTGTTCGGCCTGGCGCTGGG
CAGCTTTTACAACGTGGTGATCTATCGTCTGCCGCGCATGTTGACCCAGACCGCGGACGACGAGCGGATAACCCTCAGCA
CCCCGGGCTCCTCCTGCCCGCAGTGCCGCCAGCCGATCGCCTGGCGGGACAATATCCCGCTGCTCAGTTTCCTCTGGCTG
GGCCGTCGCGCCCGCTGCTGTCAGGCGCCCATCGCGTGGAGCTATCCGCTGACCGAGCTGGCCACCGGCCTGCTGTTTAT
CCTCGCCGGGGCGCTGCTCGCGCCGGGCCTGCCGCTGGCGGGCGGCCTGCTGCTGCTCTCGTTCCTGCTGATGCTGGCGC
GGATTGACGCCCGGACCCAGCTGTTGCCCGACCGTCTGACGCTGCCCCTGCTGTGGGCCGGGCTGCTGTTCAATCTTAAC
GAGGTGTACATTGCCCTGCCGGACGCGGTCGCCGGGGCGATGGCCGGTTATCTGGCGCTGTGGTCGGTCTACTGGCTGTT
CCGCCTGCTGACCGGGAAAGAGGCGCTGGGCTATGGCGATTTTAAGCTGCTGGCGGCGCTGGGCGCCTGGTGCGGCTGGC
AGGTTCTGCCGCAGGTGCTGTTGCTCGCCTCGGCCTGCGGGCTGGTGTGGACCCTGCTGCAGCGCCTGTGGACCCGGCAG
TCGCTGCAGCAGCCGCTGGCCTTCGGCCCCTGGCTGGCGCTGGCCGGAGGGGGCATTTTTCTCTGGCAGCAGATGGTCTA
G

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (21-109)

• Type IV leader peptidase family (Peptidase_A24) (123-231)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	49.434	99.624	0.492
pilD	Vibrio campbellii strain DS40M4	45.455	100	0.47
pilD	Acinetobacter nosocomialis M2	45.627	98.872	0.451
pilD	Acinetobacter baumannii D1279779	44.867	98.872	0.444
pilD	Neisseria gonorrhoeae MS11	43.295	98.12	0.425