Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   ABR2090_RS09955 Genome accession   NZ_LN868200
Coordinates   2080026..2080661 (-) Length   211 a.a.
NCBI ID   WP_000264043.1    Uniprot ID   -
Organism   Acinetobacter baumannii isolate R2090     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2075026..2085661
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABR2090_RS09930 (ABR2090_1995) - 2075082..2076062 (-) 981 WP_043960937.1 DNA polymerase III subunit delta' -
  ABR2090_RS09935 (ABR2090_1996) kdsB 2076074..2076835 (-) 762 WP_000680700.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  ABR2090_RS09940 (ABR2090_1997) lpxK 2076845..2077855 (-) 1011 WP_000050455.1 tetraacyldisaccharide 4'-kinase -
  ABR2090_RS09945 (ABR2090_1998) msbA 2077858..2079585 (-) 1728 WP_001070729.1 lipid A export permease/ATP-binding protein MsbA -
  ABR2090_RS09950 (ABR2090_1999) - 2079582..2080010 (-) 429 WP_000669684.1 biopolymer transporter ExbD -
  ABR2090_RS09955 (ABR2090_2000) exbB 2080026..2080661 (-) 636 WP_000264043.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  ABR2090_RS09960 (ABR2090_2001) - 2080711..2081598 (-) 888 WP_000023432.1 ParB/RepB/Spo0J family partition protein -
  ABR2090_RS09965 (ABR2090_2002) - 2081595..2082377 (-) 783 WP_000057212.1 ParA family protein -
  ABR2090_RS09970 (ABR2090_2003) rsmG 2082400..2083032 (-) 633 WP_000553192.1 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG -
  ABR2090_RS09975 (ABR2090_2004) murU 2083120..2083809 (-) 690 WP_000646453.1 N-acetylmuramate alpha-1-phosphate uridylyltransferase MurU -
  ABR2090_RS09980 (ABR2090_2005) - 2083809..2084822 (-) 1014 WP_001096101.1 aminoglycoside phosphotransferase family protein -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 23241.12 Da        Isoelectric Point: 6.4861

>NTDB_id=992249 ABR2090_RS09955 WP_000264043.1 2080026..2080661(-) (exbB) [Acinetobacter baumannii isolate R2090]
MWELVKAGGWLMLPLILCSILTVAISIERFVRLRRSQVLPKVLMNDGSTDISVVITNLEQDNNAQSTALGNILKAGFEHQ
EHGEQFARAQMEAMASQEISYLEKNINFLGTLSAIAPLLGLLGTVVGIIESFLVIDFGSAGSPSLMIPGISKALITTAVG
MLIAIPALISYRYFQRVVQDYIAELEQQSTLFHASLFYKRSSVMQEHRRVG

Nucleotide


Download         Length: 636 bp        

>NTDB_id=992249 ABR2090_RS09955 WP_000264043.1 2080026..2080661(-) (exbB) [Acinetobacter baumannii isolate R2090]
ATGTGGGAACTTGTGAAAGCGGGCGGCTGGTTAATGCTGCCTTTAATTTTGTGTTCAATTTTAACCGTCGCAATTAGTAT
TGAGCGTTTTGTACGTTTAAGACGTTCACAAGTTTTACCTAAAGTACTAATGAATGATGGCAGTACAGATATTTCTGTTG
TCATAACAAATTTGGAACAGGATAATAATGCGCAAAGCACGGCATTGGGCAATATTCTAAAAGCTGGTTTTGAGCATCAG
GAACATGGCGAACAATTTGCTCGAGCACAAATGGAAGCTATGGCTTCTCAAGAAATTTCTTATTTAGAAAAAAATATTAA
CTTCTTAGGGACCTTAAGTGCTATAGCGCCTCTACTAGGGCTGCTTGGAACAGTTGTGGGAATTATTGAGTCTTTTTTGG
TTATTGATTTTGGTTCGGCAGGTAGTCCTAGTTTAATGATTCCCGGTATTTCCAAGGCTTTGATCACAACAGCAGTTGGT
ATGCTCATTGCAATTCCTGCACTTATTTCCTATCGATATTTTCAAAGAGTAGTGCAAGATTATATTGCTGAGTTAGAGCA
ACAATCTACGCTATTTCATGCCTCATTGTTTTACAAACGTTCTTCAGTCATGCAAGAACATCGCCGCGTTGGTTGA

Domains

Predicted by InterProScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(67-186)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

43.455

90.521

0.393