Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA/sms   Type   Machinery gene
Locus tag   ABR2090_RS04330 Genome accession   NZ_LN868200
Coordinates   893459..894847 (-) Length   462 a.a.
NCBI ID   WP_000048860.1    Uniprot ID   A0A059ZI65
Organism   Acinetobacter baumannii isolate R2090     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 888459..899847
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABR2090_RS04305 (ABR2090_0862) fdhD 888894..889685 (+) 792 WP_000187637.1 formate dehydrogenase accessory sulfurtransferase FdhD -
  ABR2090_RS04310 (ABR2090_0863) - 889805..890197 (+) 393 WP_000118682.1 YkvA family protein -
  ABR2090_RS04315 (ABR2090_0864) - 890302..891369 (+) 1068 WP_000706087.1 4-phosphoerythronate dehydrogenase -
  ABR2090_RS04320 (ABR2090_0865) epmA 891366..892340 (+) 975 WP_000059542.1 EF-P lysine aminoacylase EpmA -
  ABR2090_RS04325 (ABR2090_0866) - 892399..893376 (-) 978 WP_015451601.1 Tim44 domain-containing protein -
  ABR2090_RS04330 (ABR2090_0867) radA/sms 893459..894847 (-) 1389 WP_000048860.1 DNA repair protein RadA Machinery gene
  ABR2090_RS04335 (ABR2090_0868) - 895337..896743 (+) 1407 WP_043961213.1 amino acid permease -
  ABR2090_RS04340 (ABR2090_0869) lptM 896884..897108 (+) 225 WP_001255198.1 LPS translocon maturation chaperone LptM -
  ABR2090_RS04345 (ABR2090_0870) lysA 897131..898381 (+) 1251 WP_000011151.1 diaminopimelate decarboxylase -
  ABR2090_RS04350 (ABR2090_0871) dapF 898387..899232 (+) 846 WP_000923480.1 diaminopimelate epimerase -

Sequence

Protein


Download         Length: 462 a.a.        Molecular weight: 49728.19 Da        Isoelectric Point: 7.4015

>NTDB_id=992231 ABR2090_RS04330 WP_000048860.1 893459..894847(-) (radA/sms) [Acinetobacter baumannii isolate R2090]
MSKVKTVYRCEQCGADHLKWAGQCSECGEWNCLNEVKLEPTTAHRARPKVGGYAGQVANITTLNKVSVSHETRLPTGISE
FDRVLGGGLVTGSVVLIGGDPGIGKSTILLQTATHMASAKSSALYITGEESLSQVALRAQRLDLPTDQLKVMAETCVERI
CEVLEQERPVVAILDSIQTLYTETLQSAPGGVSQIRESAALLTRYAKNSGTALFIVGHVTKEGALAGPRVLEHMVDCVLY
FEGQSDSRYRMIRAVKNRFGAVNELGVFGMTDKGLREVANPSAIFLSRYDEAIPGSIVMISREGTRPLLVEVQALVDDAQ
GQPRRVALGLEQNRLNMLLAVMHRHGGVQTTGQDVYVNIVGGLKITETGSDLAVLLACASSLRTKALPQQLAVFGEVGLS
GEIRPVPNGQERLKEAAKHGFKYVILPRGNAPQKAIPGVQVIAVARLHEALTEAMQLSDELT

Nucleotide


Download         Length: 1389 bp        

>NTDB_id=992231 ABR2090_RS04330 WP_000048860.1 893459..894847(-) (radA/sms) [Acinetobacter baumannii isolate R2090]
ATGAGCAAAGTCAAAACCGTTTACCGTTGCGAGCAATGTGGTGCCGATCATCTAAAATGGGCAGGTCAATGTTCAGAGTG
TGGTGAATGGAATTGTCTTAATGAAGTCAAACTAGAACCCACCACTGCTCATCGTGCACGTCCTAAAGTTGGGGGTTATG
CGGGTCAAGTCGCCAATATTACAACGCTTAATAAAGTCTCTGTTTCTCATGAAACCCGTTTACCAACAGGCATTAGCGAA
TTTGACCGTGTGCTTGGTGGTGGCTTGGTGACAGGTTCTGTAGTACTCATTGGTGGTGACCCAGGTATTGGTAAATCGAC
CATTCTTTTACAAACAGCAACTCATATGGCAAGTGCAAAAAGTTCTGCGCTTTATATTACGGGTGAGGAATCGCTGTCAC
AGGTTGCCTTACGTGCCCAACGCCTTGACCTACCAACAGACCAGTTAAAAGTCATGGCTGAAACTTGTGTCGAACGCATT
TGTGAAGTTTTAGAACAAGAACGTCCTGTTGTCGCAATTTTGGACTCTATCCAAACGCTTTACACAGAAACGCTTCAATC
TGCGCCGGGTGGGGTTTCACAAATTCGTGAATCTGCTGCGTTATTAACCCGTTATGCAAAAAATAGTGGCACAGCGCTAT
TTATTGTTGGTCACGTGACCAAAGAAGGTGCATTGGCAGGTCCTCGTGTTTTAGAACACATGGTGGACTGCGTACTTTAC
TTTGAAGGCCAATCAGACTCACGTTATCGAATGATTCGTGCAGTGAAAAACCGTTTTGGTGCAGTCAATGAGCTTGGTGT
ATTTGGCATGACCGATAAAGGCTTACGTGAAGTGGCTAACCCTTCTGCTATTTTCTTAAGTCGTTATGACGAAGCCATTC
CAGGTTCAATTGTCATGATTAGCCGTGAAGGCACTCGCCCACTTTTAGTTGAAGTTCAGGCTTTAGTCGATGATGCTCAA
GGACAACCAAGACGTGTTGCACTTGGTCTTGAACAAAACCGTTTAAACATGTTGCTTGCTGTTATGCATCGTCATGGGGG
TGTACAAACCACCGGACAAGATGTGTATGTCAATATTGTAGGTGGTTTAAAAATTACCGAAACAGGTTCGGACTTGGCTG
TTTTACTTGCATGTGCTTCGAGTTTGCGAACAAAAGCCTTACCTCAGCAGCTTGCAGTTTTTGGTGAAGTTGGGCTTTCA
GGTGAAATCCGCCCTGTACCTAATGGTCAGGAACGTTTAAAAGAAGCAGCAAAACATGGCTTTAAATACGTCATCTTACC
AAGAGGTAATGCCCCGCAAAAAGCAATTCCGGGCGTACAAGTGATTGCAGTTGCCCGCCTGCATGAAGCCTTGACTGAGG
CGATGCAACTTAGTGATGAATTGACATAA

Domains

Predicted by InterProScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

KaiC (ATPase)

(75-150)

Subunit ChlI of Mg-chelatase (ChlI)

(346-430)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A059ZI65

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA/sms Bacillus subtilis subsp. subtilis str. 168

46.171

98.918

0.457
  radA Streptococcus mitis NCTC 12261

43.043

99.567

0.429
  radA Streptococcus pneumoniae D39

42.67

98.918

0.422
  radA Streptococcus pneumoniae TIGR4

42.67

98.918

0.422
  radA Streptococcus mitis SK321

42.67

98.918

0.422
  radA Streptococcus pneumoniae R6

42.67

98.918

0.422
  radA Streptococcus pneumoniae Rx1

42.67

98.918

0.422