Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilH   Type   Machinery gene
Locus tag   ABCIP7010_RS15050 Genome accession   NZ_LN865143
Coordinates   3254978..3255340 (-) Length   120 a.a.
NCBI ID   WP_000101096.1    Uniprot ID   A0ABN3ANQ3
Organism   Acinetobacter baumannii isolate CIP70.10     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3249978..3260340
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABCIP7010_RS15040 (ABCIP7010_3042) - 3252256..3254334 (-) 2079 WP_000505927.1 methyl-accepting chemotaxis protein -
  ABCIP7010_RS15045 (ABCIP7010_3043) - 3254381..3254917 (-) 537 WP_000729762.1 chemotaxis protein CheW -
  ABCIP7010_RS15050 (ABCIP7010_3044) pilH 3254978..3255340 (-) 363 WP_000101096.1 PleD family two-component system response regulator Machinery gene
  ABCIP7010_RS15055 (ABCIP7010_3045) pilG 3255364..3255747 (-) 384 WP_000389061.1 twitching motility response regulator PilG Regulator
  ABCIP7010_RS15060 (ABCIP7010_3046) - 3256030..3256668 (+) 639 WP_031965753.1 hypothetical protein -
  ABCIP7010_RS15065 (ABCIP7010_3047) - 3256728..3257846 (+) 1119 WP_001260821.1 efflux RND transporter periplasmic adaptor subunit -

Sequence

Protein


Download         Length: 120 a.a.        Molecular weight: 13479.47 Da        Isoelectric Point: 4.9102

>NTDB_id=992182 ABCIP7010_RS15050 WP_000101096.1 3254978..3255340(-) (pilH) [Acinetobacter baumannii isolate CIP70.10]
MARILIVDDSPTETFRFKEILTKHGYDVLEASNGADGVTLAKAEQPDLVLMDVVMPGVNGFQATRQITRDEDTKHIPVVI
VSTKDQATDRVWGKRQGAIDYLIKPIEEKQLIDVIKQFLN

Nucleotide


Download         Length: 363 bp        

>NTDB_id=992182 ABCIP7010_RS15050 WP_000101096.1 3254978..3255340(-) (pilH) [Acinetobacter baumannii isolate CIP70.10]
ATGGCACGTATTCTCATTGTTGATGACTCACCAACAGAAACTTTTCGTTTTAAAGAAATCCTAACTAAGCATGGCTATGA
CGTACTTGAAGCATCTAACGGTGCAGATGGTGTGACTTTGGCAAAAGCTGAGCAGCCTGACTTGGTATTAATGGATGTAG
TCATGCCAGGTGTAAATGGTTTTCAGGCAACGCGCCAGATTACCCGTGATGAAGACACGAAGCATATTCCGGTGGTGATT
GTGAGTACTAAAGATCAGGCAACTGACCGAGTATGGGGTAAACGTCAAGGCGCAATCGATTACTTAATCAAGCCAATCGA
AGAAAAGCAATTAATTGATGTAATTAAACAATTTCTAAATTAA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(4-115)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilH Synechocystis sp. PCC 6803

39.496

99.167

0.392

Multiple sequence alignment