Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   AAHU49_RS24290 Genome accession   NZ_CP153790
Coordinates   5024854..5026374 (+) Length   506 a.a.
NCBI ID   WP_032454493.1    Uniprot ID   -
Organism   Klebsiella quasipneumoniae subsp. quasipneumoniae strain KP_NORM_BLD_114473     
Function   require for natural transformation (predicted from homology)   
Unclear

Genomic Context

Location: 5019854..5031374
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AAHU49_RS24265 (AAHU49_24210) ilvE 5021414..5022343 (-) 930 WP_002883171.1 branched-chain-amino-acid transaminase -
  AAHU49_RS24270 (AAHU49_24215) ilvM 5022360..5022617 (-) 258 WP_004886870.1 acetolactate synthase 2 small subunit -
  AAHU49_RS24275 (AAHU49_24220) ilvG 5022614..5024260 (-) 1647 WP_023291544.1 acetolactate synthase 2 catalytic subunit -
  AAHU49_RS24280 ilvX 5024263..5024316 (-) 54 WP_201281575.1 peptide IlvX -
  AAHU49_RS24285 (AAHU49_24225) ilvL 5024401..5024499 (-) 99 WP_001311244.1 ilv operon leader peptide -
  AAHU49_RS24290 (AAHU49_24230) comM 5024854..5026374 (+) 1521 WP_032454493.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  AAHU49_RS24295 (AAHU49_24235) - 5026399..5026737 (-) 339 WP_004886877.1 DUF413 domain-containing protein -
  AAHU49_RS24300 (AAHU49_24240) hdfR 5026856..5027677 (+) 822 WP_065883598.1 HTH-type transcriptional regulator HdfR -

Sequence

Protein


Download         Length: 506 a.a.        Molecular weight: 55155.54 Da        Isoelectric Point: 8.4902

>NTDB_id=992182 AAHU49_RS24290 WP_032454493.1 5024854..5026374(+) (comM) [Klebsiella quasipneumoniae subsp. quasipneumoniae strain KP_NORM_BLD_114473]
MSLAIVYTRAALGIEAPLITVEVHLSNGLPGLTMVGLPETTVKEARDRVRSALINSGYAFPAKKITINLAPADLPKEGGR
YDLPIALALLVASEQLNTTRLNHYEFVGELALTGGLRGVPGAIPSAMEAIKAGRRIVVSADNAAEVGLIGGSDCLVADHL
QEVCAFLAGQTSLSPPLAEAPIVDERGEDLRDVIGQQQGKRALEIVAAGGHNLLLIGPPGTGKTMLASRLPGLLPPLSNQ
EALESTAIQSLVNLHTAKTRWRQRPFRAPHHSASLAAMVGGGSIPVPGEISLAHNGVLFLDELPEFERRVLDALREPIES
GKIHISRSRAKIDYPARFQLIAAMNPSPTGHYQGKHNRTSPEQTLRYLGRLSGPFLDRFDLSLEIPLPPPGILSQGTQGE
ESSATVRQRVLAARERQMLRQNKLNAHLENREMKSCCHLRREDAVWLEQTLTQLGLSIRAWQRLLKVARTIADLAEAEEI
ERRHLQEALSYRAIDRMLNHLQKMMA

Nucleotide


Download         Length: 1521 bp        

>NTDB_id=992182 AAHU49_RS24290 WP_032454493.1 5024854..5026374(+) (comM) [Klebsiella quasipneumoniae subsp. quasipneumoniae strain KP_NORM_BLD_114473]
ATGTCGCTCGCCATCGTCTATACTCGCGCGGCGCTCGGTATCGAAGCGCCATTGATTACTGTCGAGGTTCATCTCAGCAA
CGGTCTGCCCGGCCTGACTATGGTCGGACTGCCGGAGACTACCGTGAAAGAGGCCCGTGACCGGGTCCGTAGCGCCCTGA
TCAACAGCGGCTACGCTTTCCCTGCGAAGAAAATAACCATTAACCTGGCGCCAGCGGATCTACCTAAAGAGGGCGGACGA
TACGATCTGCCTATCGCTCTCGCGCTTCTCGTCGCCTCAGAGCAGCTCAATACGACGCGACTGAATCACTATGAGTTTGT
GGGCGAACTCGCCCTCACAGGTGGGTTACGTGGCGTTCCAGGGGCGATCCCCAGCGCAATGGAGGCCATCAAAGCCGGCC
GGCGTATCGTCGTCTCCGCTGATAATGCGGCTGAGGTCGGCCTGATCGGCGGCAGCGATTGCCTGGTCGCCGACCATCTG
CAGGAGGTGTGCGCTTTTCTCGCGGGGCAGACATCGCTTTCACCGCCTCTTGCCGAGGCACCTATTGTTGATGAACGCGG
CGAAGATTTGCGCGATGTTATCGGCCAGCAGCAGGGAAAACGAGCGCTGGAGATTGTGGCCGCCGGGGGTCACAACCTGC
TCCTGATAGGCCCGCCCGGCACCGGGAAAACCATGCTTGCCAGCCGGCTACCCGGTCTCCTGCCGCCATTAAGCAATCAG
GAAGCACTGGAGAGCACCGCCATTCAGAGCCTGGTCAATCTGCATACCGCGAAGACCCGGTGGCGTCAGAGGCCGTTTCG
CGCGCCTCACCATAGCGCCTCGCTGGCAGCGATGGTGGGCGGCGGCTCAATACCGGTCCCCGGTGAGATTTCCCTGGCCC
ATAATGGCGTGCTGTTTCTTGATGAACTGCCTGAGTTTGAGCGGCGTGTACTGGATGCGCTGCGCGAACCCATTGAGTCA
GGCAAGATCCACATATCACGCTCGCGCGCCAAAATTGACTATCCGGCGCGCTTTCAGCTTATCGCGGCGATGAACCCAAG
CCCGACAGGGCATTATCAGGGCAAACATAATCGTACATCGCCTGAGCAGACATTACGTTATCTGGGACGTCTGTCAGGCC
CCTTCCTTGACCGCTTCGATCTCTCCTTAGAGATCCCGCTGCCGCCGCCAGGGATACTGAGCCAGGGCACGCAGGGCGAA
GAGTCTAGCGCAACGGTCCGGCAGCGGGTGCTGGCGGCGCGCGAACGGCAAATGCTCAGGCAAAATAAGCTCAATGCTCA
TCTTGAGAATCGTGAAATGAAGAGCTGCTGCCACTTACGGCGGGAGGACGCTGTCTGGCTGGAACAGACGCTAACGCAGT
TGGGGCTCTCTATTCGAGCCTGGCAGCGTCTGTTAAAGGTGGCGAGAACCATTGCCGATCTGGCAGAGGCTGAAGAGATT
GAACGCCGTCATTTGCAGGAGGCGCTCAGCTATCGGGCGATAGACCGGATGCTAAACCATCTGCAGAAAATGATGGCGTA
A

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(189-386)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(400-492)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Haemophilus influenzae Rd KW20

60.274

100

0.609
  comM Glaesserella parasuis strain SC1401

59.921

100

0.603
  comM Vibrio cholerae strain A1552

59.841

99.407

0.595
  comM Vibrio campbellii strain DS40M4

59.722

99.605

0.595
  comM Legionella pneumophila str. Paris

49.899

98.221

0.49
  comM Legionella pneumophila strain ERS1305867

49.899

98.221

0.49
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

44.814

100

0.453

Multiple sequence alignment