Detailed information    

insolico Bioinformatically predicted

Overview

Name   recF   Type   Machinery gene
Locus tag   ACKTXI_RS17865 Genome accession   NZ_AP035884
Coordinates   4004279..4005409 (+) Length   376 a.a.
NCBI ID   WP_030077232.1    Uniprot ID   A0ABW2MIR1
Organism   Streptomyces sp. CMC78     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3999279..4010409
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACKTXI_RS17855 (SCMC78_36360) dnaN 4002036..4003166 (+) 1131 WP_003967886.1 DNA polymerase III subunit beta -
  ACKTXI_RS17860 (SCMC78_36370) gnd 4003327..4004205 (+) 879 WP_030077234.1 phosphogluconate dehydrogenase (NAD(+)-dependent, decarboxylating) -
  ACKTXI_RS17865 (SCMC78_36380) recF 4004279..4005409 (+) 1131 WP_030077232.1 DNA replication/repair protein RecF Machinery gene
  ACKTXI_RS17870 (SCMC78_36390) - 4005406..4006083 (+) 678 WP_397721881.1 DUF721 domain-containing protein -
  ACKTXI_RS17875 (SCMC78_36400) gyrB 4006553..4008622 (+) 2070 WP_351062131.1 DNA topoisomerase (ATP-hydrolyzing) subunit B -

Sequence

Protein


Download         Length: 376 a.a.        Molecular weight: 40953.68 Da        Isoelectric Point: 6.8623

>NTDB_id=99208 ACKTXI_RS17865 WP_030077232.1 4004279..4005409(+) (recF) [Streptomyces sp. CMC78]
MHVTHLSLADFRSYARVEVPLDPGVTAFVGPNGQGKTNLVEAVGYLATLGSHRVSSDAPLVRMGAERAVIRAAVTQGERS
QLIELELNPGRANRARINRSSQVRPRDVLGIVRTVLFAPEDLALVKGDPGERRRFLDELITARSPRMAGVRSDYERVLKQ
RNTLLKSAAMARRHGGRSMDMSTLDVWDQHLARVGAELLAQRLDLIATLQPLADKAYGDVAPGGGPVALEYRSSVGEDVG
PERTRDELYEQLIAALVGVRKQEIERGVTLVGPHRDDLLLGLRGMPAKGYASHGESWSYALALRLASYELLRSEGNEPVL
VLDDVFAELDARRRERLAELVAPGEQVLVTAAVAEDVPGVLAGTRYAVTAGEVERV

Nucleotide


Download         Length: 1131 bp        

>NTDB_id=99208 ACKTXI_RS17865 WP_030077232.1 4004279..4005409(+) (recF) [Streptomyces sp. CMC78]
ATGCATGTCACCCATCTCTCGCTGGCCGACTTCCGCTCGTACGCCCGGGTCGAGGTCCCTCTCGACCCGGGCGTCACCGC
GTTCGTGGGGCCCAACGGGCAGGGCAAGACCAATCTCGTCGAGGCCGTCGGCTATCTCGCCACCCTCGGCAGCCACCGGG
TCTCCTCGGACGCCCCGCTGGTGCGGATGGGCGCGGAGCGGGCGGTGATCCGCGCGGCGGTGACCCAGGGCGAGCGCTCC
CAGCTGATCGAGCTGGAGCTGAACCCGGGCCGCGCCAACCGGGCCCGGATCAACCGGTCCTCGCAGGTCAGACCGCGTGA
TGTGCTCGGCATCGTACGGACGGTGCTGTTCGCGCCGGAGGATCTGGCGCTGGTCAAGGGTGATCCGGGCGAGCGGCGGC
GGTTCCTGGACGAGCTGATCACCGCGCGGTCGCCCCGGATGGCCGGGGTCCGCTCCGACTACGAGCGGGTGCTCAAGCAG
CGCAACACCCTGCTGAAGTCGGCGGCGATGGCCCGTCGGCACGGCGGCCGCTCGATGGACATGTCCACGCTCGACGTCTG
GGACCAGCACCTGGCCCGGGTGGGCGCCGAACTGCTCGCGCAGCGGCTCGACCTGATCGCCACGCTCCAGCCGCTGGCCG
ACAAGGCGTACGGGGACGTCGCGCCGGGCGGCGGGCCGGTGGCGCTGGAGTACCGCAGCTCGGTCGGCGAGGACGTGGGT
CCCGAGCGCACCCGCGACGAGCTGTACGAGCAGCTGATCGCGGCTCTGGTGGGGGTCCGCAAGCAGGAGATCGAGCGGGG
CGTGACGCTGGTCGGTCCGCACCGTGACGATCTGCTGCTCGGGCTGCGGGGGATGCCGGCGAAGGGGTACGCGAGTCACG
GCGAGTCCTGGAGTTACGCGCTGGCGCTGCGTCTTGCCAGTTACGAGCTGCTGCGCTCGGAGGGCAACGAGCCGGTGCTG
GTCCTGGACGACGTCTTCGCCGAGCTGGACGCCCGCCGCCGGGAGCGGCTGGCGGAGCTGGTGGCCCCGGGTGAGCAGGT
GCTCGTGACGGCGGCGGTGGCGGAGGACGTTCCGGGCGTGCTGGCGGGGACGCGGTACGCGGTGACGGCGGGCGAGGTGG
AGCGCGTATGA

Domains

Predicted by InterProScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(3-351)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recF Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

38.082

97.074

0.37

Multiple sequence alignment