Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFA   Type   Machinery gene
Locus tag   SABB155_RS03740 Genome accession   NZ_LN854556
Coordinates   765633..766715 (+) Length   360 a.a.
NCBI ID   WP_054189265.1    Uniprot ID   -
Organism   Staphylococcus aureus strain BB155     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 760633..771715
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SABB155_RS03720 (SABB155_06890) gdpS 761003..762073 (-) 1071 WP_000460983.1 GGDEF domain-containing protein GdpS -
  SABB155_RS03725 (SABB155_06900) - 762391..763446 (+) 1056 WP_000258151.1 glycosyltransferase family 4 protein -
  SABB155_RS03730 (SABB155_06910) - 763618..764259 (-) 642 WP_054189263.1 YigZ family protein -
  SABB155_RS03735 (SABB155_06920) fakB1 764403..765269 (+) 867 WP_054189264.1 fatty acid kinase binding subunit FakB1 -
  SABB155_RS03740 (SABB155_06930) comFA 765633..766715 (+) 1083 WP_054189265.1 DEAD/DEAH box helicase Machinery gene
  SABB155_RS03745 (SABB155_06940) - 766708..767382 (+) 675 WP_054189266.1 ComF family protein -
  SABB155_RS03750 (SABB155_06950) hpf 767443..768015 (+) 573 WP_054189267.1 ribosome hibernation-promoting factor, HPF/YfiA family -
  SABB155_RS03755 (SABB155_06960) secA 768430..770961 (+) 2532 WP_054189268.1 preprotein translocase subunit SecA -
  SABB155_RS14615 - 771003..771100 (+) 98 Protein_727 hypothetical protein -

Sequence

Protein


Download         Length: 360 a.a.        Molecular weight: 42047.54 Da        Isoelectric Point: 9.6803

>NTDB_id=992055 SABB155_RS03740 WP_054189265.1 765633..766715(+) (comFA) [Staphylococcus aureus strain BB155]
MDNVTRYKITESSQSSSQAYYHLSFELSEQQAYASEHIVRAIRMRQTILLYAVTGAGKTEMMFQGIQYARRQGDNIAIVS
PRVDVVVEISKRIKDAFLNEDIDILHQQSSQQFEGHFVVCTVHQLYRFKQHFDTIFIDEVDAFPLSMDKSLQQALKSSSK
VEHATIYMTATPPKQLLSEIPHENIIKLPARFHKKSLPVPKYRYFKLNNNKIQQMLYRILQDQINKQRYTLVFFNNIETM
IKTFSVYKQKITKLTYVHSEDIFRFEKVEQLRNGHFDVIFTTTILERGFTMANLDVVVIDAHQYTQEALIQISGRVGRKL
ECPTGKVLFFHEGVSMNMIQAKKEIQKMNKLALKRGWIDE

Nucleotide


Download         Length: 1083 bp        

>NTDB_id=992055 SABB155_RS03740 WP_054189265.1 765633..766715(+) (comFA) [Staphylococcus aureus strain BB155]
ATGGATAATGTAACAAGATATAAAATAACAGAGAGTTCGCAAAGTTCATCACAAGCATATTATCATCTCTCATTTGAATT
GTCGGAACAGCAGGCTTATGCCTCTGAGCATATTGTTCGAGCCATTAGAATGAGACAAACGATTTTGTTATATGCAGTAA
CAGGTGCAGGTAAGACAGAAATGATGTTTCAAGGCATTCAATATGCAAGACGACAGGGAGATAATATAGCTATTGTGTCG
CCACGTGTAGATGTTGTTGTAGAAATTAGTAAACGTATTAAAGACGCATTTCTTAATGAAGATATAGACATACTACACCA
GCAATCAAGTCAACAATTTGAAGGGCATTTTGTTGTATGTACAGTGCATCAACTTTACCGCTTCAAACAGCACTTTGATA
CTATTTTTATTGATGAAGTCGATGCCTTTCCTTTATCAATGGATAAAAGTTTACAACAAGCATTGAAGTCATCTTCTAAA
GTTGAACATGCAACGATTTATATGACAGCAACACCACCAAAACAACTTCTGTCAGAGATTCCCCACGAAAATATAATTAA
ATTGCCAGCTCGCTTTCATAAAAAATCACTTCCAGTTCCTAAATATCGCTATTTCAAACTTAATAATAATAAGATTCAGC
AAATGTTATATCGAATTTTACAAGATCAAATTAATAAACAACGTTATACACTGGTGTTTTTTAACAATATAGAAACAATG
ATTAAAACATTTTCGGTTTATAAGCAGAAAATTACTAAATTAACATATGTCCATAGCGAGGATATTTTTCGCTTTGAAAA
AGTTGAACAATTAAGGAATGGACATTTCGATGTCATTTTTACTACGACAATATTAGAACGTGGATTTACAATGGCAAATT
TGGATGTTGTTGTTATCGATGCACATCAATATACTCAAGAGGCTTTAATACAAATTTCTGGACGCGTTGGACGAAAATTA
GAATGTCCTACTGGAAAAGTATTGTTTTTTCATGAAGGAGTAAGTATGAATATGATTCAAGCTAAAAAAGAAATTCAAAA
GATGAACAAATTAGCATTAAAAAGAGGTTGGATTGATGAATAA

Domains

Predicted by InterProScan.

Helicase conserved C-terminal domain (Helicase_C)

(214-318)

Type III restriction enzyme, res subunit (ResIII)

(25-173)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFA Bacillus subtilis subsp. subtilis str. 168

38.643

94.167

0.364