Detailed information    

insolico Bioinformatically predicted

Overview

Name   rpoS   Type   Regulator
Locus tag   AT689_RS08460 Genome accession   NZ_LN831051
Coordinates   1599707..1600816 (-) Length   369 a.a.
NCBI ID   WP_000201902.1    Uniprot ID   -
Organism   Streptococcus pneumoniae strain NCTC7465     
Function   regulation of chitinases (predicted from homology)   
Competence regulation

Genomic Context

Location: 1594707..1605816
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AT689_RS08425 (ERS445053_01652) - 1594923..1595081 (-) 159 WP_001808548.1 hypothetical protein -
  AT689_RS08430 (ERS445053_01653) obgE 1595091..1596401 (-) 1311 WP_000061639.1 GTPase ObgE -
  AT689_RS08435 (ERS445053_01654) - 1596465..1596599 (-) 135 WP_000863859.1 DUF4044 domain-containing protein -
  AT689_RS08440 (ERS445053_01655) - 1596658..1596834 (-) 177 WP_001256254.1 PspC domain-containing protein -
  AT689_RS08445 (ERS445053_01656) - 1596865..1598190 (-) 1326 WP_001219426.1 glycosyltransferase family 4 protein -
  AT689_RS08450 (ERS445053_01657) cpoA 1598206..1599249 (-) 1044 WP_000412279.1 alpha-galactosylglucosyldiacylglycerol synthase -
  AT689_RS08455 (ERS445053_01658) - 1599364..1599693 (-) 330 WP_000331928.1 metal-sulfur cluster assembly factor -
  AT689_RS08460 (ERS445053_01659) rpoS 1599707..1600816 (-) 1110 WP_000201902.1 RNA polymerase sigma factor RpoD Regulator
  AT689_RS08465 (ERS445053_01660) dnaG 1600819..1602579 (-) 1761 WP_000227891.1 DNA primase -
  AT689_RS08470 (ERS445053_01661) - 1602669..1603427 (-) 759 WP_000125408.1 ABC transporter ATP-binding protein -
  AT689_RS08475 (ERS445053_01662) - 1603424..1604290 (-) 867 WP_000637238.1 ABC transporter permease -
  AT689_RS08480 (ERS445053_01663) trpX 1604359..1605363 (-) 1005 WP_000792168.1 tryptophan ABC transporter substrate-binding protein -

Sequence

Protein


Download         Length: 369 a.a.        Molecular weight: 42016.61 Da        Isoelectric Point: 4.4648

>NTDB_id=991819 AT689_RS08460 WP_000201902.1 1599707..1600816(-) (rpoS) [Streptococcus pneumoniae strain NCTC7465]
MATKQKEVTTFDVQVAEFIRNHKQKGTATDDEINASLVIPFTLDADGIEDLLQRIQDAGISITDNEGNPSARVLSNEEEP
ELSDEDLVGSTSAKVNDPVRMYLKEIGVVPLLTNEEEKELALAVEAGDIEAKQRLAEANLRLVVSIAKRYVGRGMQFLDL
IQEGNMGLMKAVDKFDYSKGFKFSTYATWWIRQAITRAIADQARTIRIPVHMVETINKLVREQRNLLQELGQDPTPEQIA
ERMDMTPDKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDEVIENPVDYTTRIVLREQLDEILDTLTDREENVLRLRFG
LDDGKMRTLEDVGKVFNVTRERIRQIEAKALRKLRQPSRSKPLRDFIED

Nucleotide


Download         Length: 1110 bp        

>NTDB_id=991819 AT689_RS08460 WP_000201902.1 1599707..1600816(-) (rpoS) [Streptococcus pneumoniae strain NCTC7465]
ATGGCAACAAAACAAAAAGAAGTAACAACATTTGACGTACAGGTAGCAGAATTTATCCGTAATCATAAGCAAAAAGGGAC
AGCAACAGATGATGAAATCAATGCAAGTCTGGTTATTCCTTTTACCTTGGACGCTGATGGGATTGAAGATCTCTTGCAAC
GGATTCAGGATGCAGGCATTTCTATCACAGATAACGAAGGAAATCCAAGTGCGCGTGTTCTTAGCAATGAAGAAGAACCA
GAACTCAGCGATGAGGACTTGGTTGGGTCAACTTCTGCTAAGGTCAATGACCCTGTCCGTATGTACTTGAAAGAAATAGG
GGTCGTTCCTCTCTTGACCAATGAAGAGGAGAAAGAGTTGGCACTGGCTGTTGAAGCTGGCGATATCGAAGCCAAACAAC
GTCTTGCGGAAGCCAATCTTCGTTTGGTTGTTTCTATTGCCAAACGCTATGTCGGTCGTGGCATGCAGTTCCTTGACTTG
ATTCAAGAAGGAAATATGGGCTTGATGAAGGCGGTTGACAAGTTTGACTATTCTAAAGGGTTCAAGTTTTCAACTTATGC
AACTTGGTGGATTCGTCAGGCTATCACTCGTGCTATTGCGGATCAAGCTCGTACCATCCGTATCCCAGTTCACATGGTTG
AAACTATCAATAAATTGGTTCGTGAACAGCGGAATCTCCTTCAAGAATTGGGGCAAGATCCGACACCAGAACAGATTGCT
GAACGAATGGATATGACACCTGATAAGGTTCGTGAAATCTTGAAGATTGCCCAAGAACCAGTATCTCTTGAAACTCCTAT
CGGTGAAGAGGACGATAGCCACCTTGGAGACTTTATCGAAGATGAAGTGATTGAAAATCCAGTGGATTATACGACTCGTA
TCGTCTTGCGTGAGCAATTGGATGAAATCTTAGATACTCTTACAGACCGTGAAGAAAATGTTCTGCGTCTACGTTTTGGA
CTAGATGATGGAAAAATGCGCACACTTGAAGATGTGGGGAAAGTCTTTAACGTAACTCGTGAGCGTATCCGTCAGATTGA
AGCAAAGGCTTTGAGAAAACTACGCCAACCAAGCCGCAGCAAACCGCTTCGTGATTTTATTGAAGACTAA

Domains

Predicted by InterProScan.

Sigma-70 factor, region 1.2 (Sigma70_r1_2)

(97-128)

Sigma-70 region 2 (Sigma70_r2)

(135-204)

Sigma-70, region 4 (Sigma70_r4)

(304-356)

Sigma-70 factor, region 1.1 (Sigma70_r1_1)

(14-85)

Sigma-70 region 3 (Sigma70_r3)

(214-290)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoS Vibrio cholerae O1 biovar El Tor strain E7946

46.503

77.507

0.36