Detailed information    

insolico Bioinformatically predicted

Overview

Name   xerS   Type   Machinery gene
Locus tag   AT689_RS08230 Genome accession   NZ_LN831051
Coordinates   1550792..1551862 (+) Length   356 a.a.
NCBI ID   WP_000817878.1    Uniprot ID   C1CKQ9
Organism   Streptococcus pneumoniae strain NCTC7465     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1545792..1556862
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AT689_RS08210 (ERS445053_01607) - 1546814..1547170 (+) 357 WP_000964255.1 hypothetical protein -
  AT689_RS08215 (ERS445053_01608) - 1547245..1548561 (-) 1317 WP_001145974.1 DNA cytosine methyltransferase -
  AT689_RS08220 (ERS445053_01609) - 1548680..1549369 (-) 690 WP_000491151.1 XRE family transcriptional regulator -
  AT689_RS08225 (ERS445053_01610) - 1549511..1550329 (+) 819 WP_000674054.1 hypothetical protein -
  AT689_RS08230 (ERS445053_01611) xerS 1550792..1551862 (+) 1071 WP_000817878.1 tyrosine recombinase XerS Machinery gene
  AT689_RS08235 (ERS445053_01612) - 1551935..1552924 (-) 990 WP_000873993.1 lipoate--protein ligase -
  AT689_RS08240 (ERS445053_01613) lpdA 1552988..1554691 (-) 1704 WP_001162938.1 dihydrolipoyl dehydrogenase -
  AT689_RS08245 (ERS445053_01614) - 1554737..1555780 (-) 1044 WP_000752697.1 dihydrolipoamide acetyltransferase -

Sequence

Protein


Download         Length: 356 a.a.        Molecular weight: 41113.17 Da        Isoelectric Point: 9.6949

>NTDB_id=991816 AT689_RS08230 WP_000817878.1 1550792..1551862(+) (xerS) [Streptococcus pneumoniae strain NCTC7465]
MKREILLERIDKLKQLMPWYVLEYYQSKLAVPYSFTTLYEYLKEYDRFFSWVLESGISNADKISDIPLSVLENMSKKDME
SFILYLRERPLLNANTTKQGVSQTTINRTLSALSSLYKYLTEEVENDQGEPYFYRNVMKKVSTKKKKETLAARAENIKQK
LFLGDETAGFLTYIDQEHPQQLSNRALSSFNKNKERDLAIIALLLASGVRLSEAVNLDLRDLNLKMMVIDVTRKGGKRDS
VNVAAFAKPYLENYLAIRNQRYKTEKTDTALFLTLYRGVPNRIDASSVEKMVAKYSEDFKVRVTPHKLRHTLATRLYDAT
KSQVLVSHQLGHASTQVTDLYTHIVNDEQKNALDSL

Nucleotide


Download         Length: 1071 bp        

>NTDB_id=991816 AT689_RS08230 WP_000817878.1 1550792..1551862(+) (xerS) [Streptococcus pneumoniae strain NCTC7465]
ATGAAACGTGAGATTTTACTGGAACGAATCGACAAACTAAAACAACTCATGCCCTGGTATGTTCTGGAATACTACCAATC
TAAACTGGCTGTGCCCTACAGTTTTACAACCCTGTACGAATACCTTAAGGAATATGACCGATTTTTCAGCTGGGTTTTGG
AGTCTGGTATTTCAAACGCTGATAAAATATCCGATATTCCTTTATCAGTTTTGGAAAATATGTCTAAGAAAGACATGGAA
TCCTTTATCCTTTATCTACGTGAACGTCCCTTGCTGAATGCTAATACAACAAAACAAGGTGTTTCACAGACAACTATCAA
TCGAACCTTATCAGCACTTTCTAGTCTTTACAAGTATCTAACCGAGGAGGTTGAAAATGATCAGGGGGAACCTTATTTCT
ATCGTAATGTAATGAAAAAAGTTTCAACCAAGAAAAAGAAAGAAACCCTTGCTGCCAGAGCTGAAAATATCAAGCAAAAA
CTCTTTCTAGGTGATGAAACAGCAGGTTTTCTAACTTATATCGATCAAGAGCACCCACAACAGCTTTCAAATCGAGCTCT
CTCATCATTCAACAAAAATAAAGAACGAGATTTAGCCATTATTGCCCTTCTCTTGGCATCTGGTGTTCGCTTATCTGAAG
CTGTTAATCTAGATCTAAGAGATCTCAATCTAAAAATGATGGTTATTGATGTTACTCGAAAAGGTGGCAAACGTGACTCA
GTCAATGTCGCTGCTTTTGCTAAACCTTATTTAGAGAATTATCTGGCCATTCGGAATCAACGCTATAAAACGGAAAAAAC
AGATACAGCCCTTTTTTTAACTCTCTACAGAGGTGTTCCTAATCGTATCGATGCTTCTAGCGTTGAGAAAATGGTTGCTA
AATACTCAGAGGATTTTAAAGTGCGTGTAACACCCCATAAACTGCGCCATACGCTAGCAACTAGGCTCTATGATGCGACT
AAATCACAAGTTTTAGTCAGTCACCAACTAGGACATGCCAGCACACAAGTCACTGACCTCTATACCCATATTGTTAATGA
TGAACAAAAGAATGCTCTAGATAGTTTATAA

Domains

Predicted by InterProScan.

Phage integrase family (Phage_integrase)

(188-344)

Phage integrase, N-terminal SAM-like domain (Phage_int_SAM_1)

(71-123)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB C1CKQ9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  xerS Streptococcus pneumoniae R6

99.719

100

0.997