Detailed information    

insolico Bioinformatically predicted

Overview


Name   ceuB   Type   Machinery gene
Locus tag   AT689_RS04750 Genome accession   NZ_LN831051
Coordinates   875623..876582 (-) Length   319 a.a.
NCBI ID   WP_000777252.1    Uniprot ID   -
Organism   Streptococcus pneumoniae strain NCTC7465     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context


Location: 870623..881582
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AT689_RS04720 (ERS445053_00922) scpB 871122..871691 (+) 570 WP_000105314.1 SMC-Scp complex subunit ScpB -
  AT689_RS04725 (ERS445053_00923) - 871678..872400 (+) 723 WP_001222228.1 pseudouridine synthase -
  AT689_RS04730 (ERS445053_00924) yidD 872400..872642 (+) 243 WP_000821640.1 membrane protein insertion efficiency factor YidD -
  AT689_RS04735 (ERS445053_00925) - 872867..873832 (-) 966 WP_000858242.1 siderophore ABC transporter substrate-binding protein -
  AT689_RS04740 (ERS445053_00926) - 873928..874680 (-) 753 WP_000764310.1 ABC transporter ATP-binding protein -
  AT689_RS04745 (ERS445053_00927) - 874677..875633 (-) 957 WP_001193669.1 iron chelate uptake ABC transporter family permease subunit -
  AT689_RS04750 (ERS445053_00928) ceuB 875623..876582 (-) 960 WP_000777252.1 ABC transporter permease Machinery gene
  AT689_RS13665 - 876879..876989 (-) 111 WP_001108391.1 hypothetical protein -
  AT689_RS04760 (ERS445053_00929) galE 877005..877706 (-) 702 WP_000167817.1 UDP-glucose 4-epimerase GalE -
  AT689_RS04765 (ERS445053_00930) pepA 878107..879171 (+) 1065 WP_000209207.1 glutamyl aminopeptidase -
  AT689_RS04770 (ERS445053_00931) - 879193..879489 (+) 297 WP_000230151.1 bacteriocin immunity protein -
  AT689_RS04775 (ERS445053_00932) - 880171..880614 (+) 444 WP_000655202.1 MarR family winged helix-turn-helix transcriptional regulator -
  AT689_RS04780 (ERS445053_00933) - 880618..881382 (+) 765 WP_000082874.1 nuclear transport factor 2 family protein -

Sequence


Protein


Download         Length: 319 a.a.        Molecular weight: 35517.43 Da        Isoelectric Point: 9.9118

>NTDB_id=991785 AT689_RS04750 WP_000777252.1 875623..876582(-) (ceuB) [Streptococcus pneumoniae strain NCTC7465]
MKLSHYLIGLLLLLVFLSISIGTSDFSWGKLFDFDQQTWLLFQESRLPRTISILLTASSMSMAGLLMQTITQNQFAAPST
VGTTEAAKLGMVLSLFVFPSASLTQKMLFAFVSSIVFTLFFLAFMTIFTVKERWMLPLIRIIYSGIIGSVTEVIAYRFNL
VQSMTAWTQGSFSMIQTHQYEWLFLGLIILITVWKLSQTFTIMNLGKETSESLGISYSLLEKLALFLVALTTSVTMITVG
GLPFLGVIVPNLVRKRYGDNLSQTKLMVALVGANLVLACDILSRVLIRPYELSVSLLLGIIGSLVFILLLWRGGRKDAD

Nucleotide


Download         Length: 960 bp        

>NTDB_id=991785 AT689_RS04750 WP_000777252.1 875623..876582(-) (ceuB) [Streptococcus pneumoniae strain NCTC7465]
ATGAAACTTTCTCATTATTTAATTGGCTTACTTCTACTCCTAGTCTTTCTCTCTATTAGCATTGGGACCAGTGATTTTTC
ATGGGGAAAGCTATTTGATTTCGACCAGCAGACCTGGCTCCTCTTTCAAGAGTCCCGTCTCCCAAGAACTATCAGTATTC
TCCTGACTGCCTCTAGTATGAGTATGGCAGGCCTTCTCATGCAGACTATTACCCAAAATCAGTTTGCTGCACCGAGTACA
GTTGGAACGACTGAAGCCGCCAAACTGGGAATGGTGCTGAGCCTTTTTGTCTTTCCATCGGCTAGTCTGACCCAAAAGAT
GCTCTTCGCTTTTGTTTCATCCATCGTATTCACCCTCTTCTTCCTAGCCTTTATGACCATTTTTACTGTAAAGGAAAGGT
GGATGTTGCCTCTGATTAGGATCATCTATAGCGGGATTATCGGCTCAGTCACAGAAGTTATCGCCTATCGTTTCAATCTG
GTTCAGAGTATGACTGCCTGGACCCAGGGCTCCTTCTCCATGATTCAGACCCATCAGTATGAGTGGCTCTTCTTAGGCCT
CATCATCCTGATAACCGTTTGGAAATTATCCCAAACCTTCACCATCATGAATCTGGGGAAAGAAACCAGCGAGAGTTTGG
GGATTTCCTACTCCCTACTTGAAAAACTGGCCCTCTTTCTGGTGGCGCTAACGACAAGCGTCACCATGATTACCGTGGGT
GGCTTACCATTTCTCGGAGTTATCGTTCCCAATCTTGTTCGCAAGCGCTATGGAGATAATCTAAGTCAAACCAAACTCAT
GGTCGCACTGGTTGGTGCCAATCTAGTTCTGGCTTGCGATATCCTATCCCGAGTTCTGATTAGGCCCTATGAGTTGTCTG
TCAGTCTCTTGCTAGGAATCATCGGTAGTCTCGTCTTTATCCTACTTCTCTGGAGAGGGGGACGAAAAGATGCAGACTAA

Domains


Predicted by InterProScan.

(10-312)


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

37.097

97.179

0.361