Detailed information    

insolico Bioinformatically predicted

Overview

Name   recO   Type   Machinery gene
Locus tag   AT689_RS02190 Genome accession   NZ_LN831051
Coordinates   423757..424527 (-) Length   256 a.a.
NCBI ID   WP_000616164.1    Uniprot ID   Q97TA7
Organism   Streptococcus pneumoniae strain NCTC7465     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 418757..429527
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AT689_RS02160 (ERS445053_00426) comA 418894..421047 (-) 2154 WP_000668306.1 peptide cleavage/export ABC transporter ComA Regulator
  AT689_RS13295 - 421632..421757 (-) 126 WP_000346297.1 PncF family bacteriocin immunity protein -
  AT689_RS02170 (ERS445053_00427) blpU 421760..421990 (-) 231 WP_001093075.1 bacteriocin-like peptide BlpU -
  AT689_RS02175 (ERS445053_00428) - 422193..422492 (-) 300 Protein_437 transposase family protein -
  AT689_RS02180 (ERS445053_00429) - 422529..422762 (-) 234 WP_000136447.1 acyl carrier protein -
  AT689_RS02185 (ERS445053_00430) plsX 422768..423760 (-) 993 WP_000717461.1 phosphate acyltransferase PlsX -
  AT689_RS02190 (ERS445053_00431) recO 423757..424527 (-) 771 WP_000616164.1 DNA repair protein RecO Machinery gene
  AT689_RS02195 (ERS445053_00432) - 424524..425693 (-) 1170 WP_000366351.1 pyridoxal phosphate-dependent aminotransferase -
  AT689_RS02200 (ERS445053_00433) - 425842..426852 (+) 1011 WP_000009173.1 YeiH family protein -
  AT689_RS13300 (ERS445053_00434) - 426881..427174 (-) 294 WP_025172549.1 hypothetical protein -
  AT689_RS02210 (ERS445053_00435) - 427215..427652 (-) 438 WP_000076480.1 CoA-binding protein -

Sequence

Protein


Download         Length: 256 a.a.        Molecular weight: 29787.35 Da        Isoelectric Point: 5.8959

>NTDB_id=991737 AT689_RS02190 WP_000616164.1 423757..424527(-) (recO) [Streptococcus pneumoniae strain NCTC7465]
MIQSITSQGLVLYNRNFREDDKLVKIFTEQVGKRMFFVKHAGQSKLAPVIQPLVLARFLLRINDDGLSYIEDYHEVMTFP
KINSDLFVMAYATYVAALADASLQDNQQDAPLFAFLQKTLELMEAGLDYQVLTNIFEIQILTRFGISLNFNECVFCHRVG
QAFDFSFKYGACLCPEHYHEDKRRCHLNPNIPYLLNQFQAIDFETLETISLKPGIKQELRQFMDQLYEEYVGIHLKSKKF
IDSLADWGQLLKEEKK

Nucleotide


Download         Length: 771 bp        

>NTDB_id=991737 AT689_RS02190 WP_000616164.1 423757..424527(-) (recO) [Streptococcus pneumoniae strain NCTC7465]
ATGATTCAGTCTATCACGAGTCAAGGCTTGGTGCTTTACAATCGCAATTTTCGTGAGGATGACAAGCTCGTCAAAATTTT
TACAGAGCAGGTTGGCAAACGCATGTTTTTTGTCAAACACGCTGGTCAGTCTAAGCTGGCGCCTGTTATTCAGCCCTTGG
TGCTGGCACGATTTCTCTTGCGAATCAATGATGACGGACTCAGTTACATCGAAGACTATCATGAGGTCATGACTTTTCCC
AAGATTAATAGTGACCTCTTTGTCATGGCCTATGCGACCTATGTGGCAGCTCTTGCAGATGCTAGTTTGCAGGACAATCA
GCAGGATGCTCCCTTGTTTGCTTTTTTGCAAAAGACTTTGGAGTTGATGGAAGCAGGCTTGGATTATCAGGTTTTGACCA
ATATTTTTGAAATTCAAATTTTGACTCGATTTGGAATCAGCCTCAATTTTAATGAGTGTGTCTTCTGCCATCGGGTTGGT
CAGGCTTTTGACTTTTCTTTCAAATATGGAGCCTGCCTCTGTCCAGAGCATTATCATGAGGATAAGAGACGTTGTCATCT
CAATCCCAATATCCCCTATCTGCTCAATCAATTTCAAGCTATTGATTTTGAGACTTTGGAGACCATTTCGCTCAAGCCTG
GAATCAAGCAAGAGCTACGCCAATTTATGGATCAATTATATGAAGAGTACGTTGGGATTCACCTAAAATCAAAGAAATTT
ATTGATTCCCTAGCAGACTGGGGACAATTACTAAAAGAGGAAAAGAAATGA

Domains

Predicted by InterProScan.

Recombination protein O C terminal (RecO_C)

(84-238)

Recombination protein O N terminal (RecO_N)

(4-72)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q97TA7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recO Streptococcus pneumoniae R6

99.219

100

0.992