Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA/sms   Type   Machinery gene
Locus tag   AT682_RS06365 Genome accession   NZ_LN831025
Coordinates   1245080..1246420 (-) Length   446 a.a.
NCBI ID   WP_002868570.1    Uniprot ID   -
Organism   Campylobacter jejuni strain NCTC11351     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1240080..1251420
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AT682_RS06340 (ERS445056_01309) - 1240217..1240987 (+) 771 WP_002882216.1 MetQ/NlpA family ABC transporter substrate-binding protein -
  AT682_RS06345 (ERS445056_01310) metE 1240999..1243263 (+) 2265 WP_002882215.1 5-methyltetrahydropteroyltriglutamate-- homocysteine S-methyltransferase -
  AT682_RS06350 (ERS445056_01311) metF 1243273..1244121 (+) 849 WP_002859283.1 methylenetetrahydrofolate reductase [NAD(P)H] -
  AT682_RS06355 - 1244143..1244334 (-) 192 WP_002852856.1 membrane protein -
  AT682_RS06360 (ERS445056_01312) atpB 1244331..1245011 (-) 681 WP_002852750.1 F0F1 ATP synthase subunit A -
  AT682_RS06365 (ERS445056_01313) radA/sms 1245080..1246420 (-) 1341 WP_002868570.1 DNA repair protein RadA Machinery gene
  AT682_RS06370 (ERS445056_01314) pilA 1246420..1247286 (-) 867 WP_002852840.1 signal recognition particle-docking protein FtsY Machinery gene
  AT682_RS06375 (ERS445056_01315) - 1247286..1247843 (-) 558 WP_002882214.1 TlpA family protein disulfide reductase -
  AT682_RS06380 - 1247926..1248552 (+) 627 WP_002860439.1 5-formyltetrahydrofolate cyclo-ligase -
  AT682_RS06385 (ERS445056_01316) rny 1248473..1250026 (+) 1554 WP_002853829.1 ribonuclease Y -
  AT682_RS06390 (ERS445056_01317) - 1250035..1250592 (+) 558 WP_002882212.1 DedA family protein -

Sequence

Protein


Download         Length: 446 a.a.        Molecular weight: 48966.88 Da        Isoelectric Point: 7.2436

>NTDB_id=991452 AT682_RS06365 WP_002868570.1 1245080..1246420(-) (radA/sms) [Campylobacter jejuni strain NCTC11351]
MAKNKALFECQACGNQQSKWLGKCPDCGAWDSFVELKAEQIKVLKELAQVSMKTSEAVCIEDVELEHFTRYSTDDNELDL
VLGGGLVEGSLVLIGGSPGVGKSTLLLKIASNLAKQGKKVLYVSGEESKAQIKLRADRLEANTPNLFLLTELCLENILEE
LHKKDYSILIVDSIQTLYSNKITSAAGSITQVREITFELMRVSKAYNISTFIIGHITKEGAIAGPRVLEHMVDVVLYFEG
DATKEIRLLRGFKNRFGGTNEVGIFEMTAKGLISAKDLANRFFTRGKAISGSALGVVMEGSRALVLEVQALVCESSYPKR
SATGYEKNRLDMLLALLERKLGIPLGHYDVFVNISGGVKVSETAADLAVVAAIISSFKNRPLSKDSIFIGELSLNGEIRE
VFSLDTRLKEAKMQKFKNAIIPSKPLEDIGLKCFVAKELSQVLEWM

Nucleotide


Download         Length: 1341 bp        

>NTDB_id=991452 AT682_RS06365 WP_002868570.1 1245080..1246420(-) (radA/sms) [Campylobacter jejuni strain NCTC11351]
ATGGCAAAAAATAAAGCACTTTTTGAATGTCAAGCCTGTGGAAATCAACAAAGTAAATGGCTTGGAAAATGTCCTGATTG
TGGAGCTTGGGATAGTTTTGTAGAATTAAAAGCTGAGCAGATTAAAGTTTTAAAAGAGCTTGCGCAAGTTAGTATGAAAA
CAAGTGAAGCTGTTTGTATTGAAGATGTGGAGTTAGAACATTTTACAAGATACAGCACAGATGATAATGAGCTTGATTTG
GTTTTAGGTGGAGGACTTGTTGAAGGTTCTTTAGTGCTTATAGGTGGAAGTCCAGGTGTCGGAAAATCTACGCTTTTGTT
AAAAATTGCTTCAAATTTAGCTAAACAGGGTAAAAAAGTCCTTTATGTAAGTGGCGAAGAAAGTAAAGCCCAGATTAAAT
TAAGAGCTGATCGTCTTGAGGCTAATACTCCGAATTTATTTTTACTTACTGAACTTTGCCTTGAAAATATTTTAGAAGAA
TTGCACAAAAAAGATTATAGCATTCTTATCGTTGATTCTATACAAACTCTATATTCAAATAAAATCACTTCAGCAGCAGG
AAGCATCACTCAGGTGCGTGAGATTACTTTTGAACTTATGCGTGTTAGCAAGGCTTATAATATCAGTACTTTTATCATAG
GGCATATTACTAAAGAAGGTGCTATAGCAGGGCCTAGGGTTCTTGAGCATATGGTAGATGTGGTGCTTTATTTTGAAGGA
GATGCTACTAAAGAAATCAGACTTTTAAGAGGCTTTAAAAATCGTTTTGGTGGAACGAATGAAGTAGGTATTTTTGAGAT
GACTGCTAAGGGTTTGATCAGTGCAAAAGATTTGGCAAATCGTTTTTTTACTCGTGGAAAGGCTATTTCAGGAAGTGCTT
TAGGTGTTGTGATGGAAGGATCTCGTGCCTTGGTTTTAGAAGTTCAAGCTTTAGTGTGTGAAAGTTCTTATCCAAAACGC
AGCGCTACAGGATATGAAAAAAATCGCTTAGATATGCTTTTGGCTTTGCTTGAAAGAAAACTTGGAATTCCTTTAGGGCA
TTATGATGTATTTGTAAATATTAGCGGCGGAGTAAAAGTAAGTGAAACTGCTGCGGATTTGGCTGTGGTTGCTGCGATTA
TTTCAAGTTTTAAAAATCGCCCTTTGAGCAAAGATAGTATTTTTATAGGAGAGCTTAGTTTAAATGGAGAAATTAGAGAG
GTTTTTAGCCTTGATACGCGTTTAAAAGAAGCTAAAATGCAAAAATTTAAAAATGCCATTATTCCTTCTAAGCCTTTGGA
AGATATAGGGCTTAAGTGTTTTGTTGCCAAAGAACTTTCACAAGTTTTAGAATGGATGTAA

Domains

Predicted by InterProScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

Subunit ChlI of Mg-chelatase (ChlI)

(344-423)

AAA domain (AAA_25)

(71-220)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA/sms Bacillus subtilis subsp. subtilis str. 168

47.356

97.534

0.462
  radA Streptococcus pneumoniae Rx1

45.861

100

0.46
  radA Streptococcus pneumoniae D39

45.861

100

0.46
  radA Streptococcus pneumoniae R6

45.861

100

0.46
  radA Streptococcus pneumoniae TIGR4

45.861

100

0.46
  radA Streptococcus mitis SK321

45.843

99.776

0.457
  radA Streptococcus mitis NCTC 12261

45.843

99.776

0.457

Multiple sequence alignment