Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   AT682_RS05715 Genome accession   NZ_LN831025
Coordinates   1116073..1116627 (+) Length   184 a.a.
NCBI ID   WP_002882609.1    Uniprot ID   -
Organism   Campylobacter jejuni strain NCTC11351     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1111073..1121627
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AT682_RS05690 (ERS445056_01174) rseP 1111381..1112487 (+) 1107 WP_002812870.1 RIP metalloprotease RseP -
  AT682_RS05695 (ERS445056_01175) - 1112480..1113340 (+) 861 WP_002882614.1 VirK family antimicrobial peptide resistance protein -
  AT682_RS09620 (ERS445056_01176) - 1113356..1113757 (-) 402 WP_172669976.1 hypothetical protein -
  AT682_RS09625 (ERS445056_01177) - 1113784..1114332 (-) 549 WP_172669975.1 sugar phosphate isomerase/epimerase family protein -
  AT682_RS10020 - 1114329..1115433 (-) 1105 Protein_1112 MFS transporter -
  AT682_RS05710 (ERS445056_01180) rpsF 1115687..1116064 (+) 378 WP_002812868.1 30S ribosomal protein S6 -
  AT682_RS05715 (ERS445056_01181) ssb 1116073..1116627 (+) 555 WP_002882609.1 single-stranded DNA-binding protein Machinery gene
  AT682_RS05720 (ERS445056_01182) rpsR 1116638..1116898 (+) 261 WP_002853032.1 30S ribosomal protein S18 -
  AT682_RS05725 (ERS445056_01183) lon 1116959..1119334 (-) 2376 WP_002866098.1 endopeptidase La -
  AT682_RS05730 (ERS445056_01184) bamD 1119351..1119998 (-) 648 WP_002882608.1 outer membrane protein assembly factor BamD -
  AT682_RS05735 (ERS445056_01185) fliW 1120159..1120548 (+) 390 WP_002852982.1 flagellar assembly protein FliW -
  AT682_RS05740 (ERS445056_01186) proC 1120548..1121279 (+) 732 WP_002882606.1 pyrroline-5-carboxylate reductase Machinery gene
  AT682_RS05745 (ERS445056_01187) ctsT 1121276..1121578 (+) 303 WP_002855822.1 transformation system protein Machinery gene

Sequence

Protein


Download         Length: 184 a.a.        Molecular weight: 20824.71 Da        Isoelectric Point: 5.0431

>NTDB_id=991444 AT682_RS05715 WP_002882609.1 1116073..1116627(+) (ssb) [Campylobacter jejuni strain NCTC11351]
MFNKVVLVGNLTRDIEMRYAQSGSAIGASAIAVTRRFTTNGEKREETCFIDISFYGRTAEVANQYLTKGSKVLIEGRLRF
EQWNDQNGQNRSKHSIQVENMEMLGGNSNAPQQGGNFGNNSFSNNNYSGNYENQSYDPYMSENQNFNKAKANPAPQRNQN
PQHEEKLKEIDIDAYDSDDTNLPF

Nucleotide


Download         Length: 555 bp        

>NTDB_id=991444 AT682_RS05715 WP_002882609.1 1116073..1116627(+) (ssb) [Campylobacter jejuni strain NCTC11351]
ATGTTTAACAAAGTTGTTTTGGTTGGAAATCTTACACGCGATATAGAAATGCGTTATGCACAAAGCGGTAGTGCTATTGG
AGCTTCCGCTATAGCAGTAACAAGAAGATTTACCACAAATGGAGAAAAAAGAGAAGAAACTTGCTTTATTGATATAAGCT
TTTATGGTCGCACCGCAGAAGTTGCAAACCAATACCTTACAAAAGGTTCAAAAGTACTCATAGAAGGACGTTTGAGATTT
GAACAATGGAATGATCAAAATGGACAAAATCGCTCTAAGCATAGCATTCAAGTTGAAAATATGGAAATGCTTGGCGGCAA
TTCCAATGCTCCACAACAAGGTGGAAATTTTGGCAATAATAGCTTTTCAAACAACAATTATAGTGGAAACTATGAAAATC
AAAGCTATGATCCTTATATGAGTGAAAATCAAAATTTTAATAAAGCAAAAGCAAACCCTGCTCCACAAAGAAACCAAAAC
CCACAACACGAAGAAAAATTAAAAGAAATTGATATCGATGCTTATGATAGCGATGATACTAATTTACCATTTTAA

Domains

Predicted by InterProScan.

Single-strand binding protein family (SSB)

(2-104)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

38.83

100

0.397

Multiple sequence alignment