Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilN   Type   Machinery gene
Locus tag   AT700_RS26280 Genome accession   NZ_LN831024
Coordinates   5727687..5728283 (-) Length   198 a.a.
NCBI ID   WP_003095839.1    Uniprot ID   G3XD30
Organism   Pseudomonas aeruginosa strain NCTC10332     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 5722687..5733283
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AT700_RS26260 (ERS445055_05372) aroK 5723818..5724336 (-) 519 WP_003095833.1 shikimate kinase AroK -
  AT700_RS26265 (ERS445055_05373) pilQ 5724348..5726492 (-) 2145 WP_012614629.1 type 4a pilus secretin PilQ Machinery gene
  AT700_RS26270 (ERS445055_05374) comL/pilP 5726546..5727070 (-) 525 WP_003095836.1 type 4a pilus biogenesis lipoprotein PilP Machinery gene
  AT700_RS26275 (ERS445055_05375) pilO 5727067..5727690 (-) 624 WP_003103268.1 type 4a pilus biogenesis protein PilO Machinery gene
  AT700_RS26280 (ERS445055_05376) pilN 5727687..5728283 (-) 597 WP_003095839.1 type 4a pilus biogenesis protein PilN Machinery gene
  AT700_RS26285 (ERS445055_05377) pilM 5728283..5729347 (-) 1065 WP_003110888.1 type IV pilus assembly protein PilM Machinery gene
  AT700_RS26290 (ERS445055_05378) - 5729532..5732003 (+) 2472 WP_003103276.1 penicillin-binding protein 1A -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 22213.55 Da        Isoelectric Point: 10.0895

>NTDB_id=991407 AT700_RS26280 WP_003095839.1 5727687..5728283(-) (pilN) [Pseudomonas aeruginosa strain NCTC10332]
MARINLLPWREELREQRKQQFLVILGGVLVASAALVFLGDQYFTAAIENQNARNDFLRKEIVVLDARIKEISELKSRRQQ
LLERMKIIQDLQGNRPIIGRVFDQLVRTLPDGVYFTDLKMTGKNIAIAGAAESNNRVSNLMRNMDASEWLTAPTLNEVKA
VTQGAVDQANVFQLTVQQTQPGEEDAKAKHGVAQGAKK

Nucleotide


Download         Length: 597 bp        

>NTDB_id=991407 AT700_RS26280 WP_003095839.1 5727687..5728283(-) (pilN) [Pseudomonas aeruginosa strain NCTC10332]
ATGGCACGGATCAACCTTCTACCCTGGCGCGAAGAGCTGCGCGAGCAGCGCAAGCAGCAGTTCCTGGTGATTCTTGGCGG
CGTCCTGGTGGCATCGGCTGCGCTGGTATTCCTTGGCGACCAGTACTTCACCGCGGCCATCGAGAACCAGAACGCCCGCA
ACGACTTCCTGCGCAAGGAAATCGTCGTACTCGACGCCCGGATCAAGGAAATCAGCGAACTGAAGTCGCGGCGCCAGCAA
TTGCTCGAGCGGATGAAGATCATCCAGGACCTGCAGGGCAACCGTCCCATCATCGGACGGGTGTTCGACCAGCTCGTGCG
GACCTTGCCCGACGGCGTGTATTTCACCGACCTGAAGATGACCGGCAAGAACATCGCCATCGCCGGCGCGGCCGAGTCCA
ACAACCGCGTTTCCAATCTCATGCGCAATATGGACGCGTCCGAGTGGCTGACCGCCCCGACCCTGAACGAGGTCAAGGCG
GTGACCCAGGGCGCGGTGGACCAGGCCAACGTGTTCCAACTGACCGTGCAGCAGACGCAGCCCGGCGAGGAAGACGCCAA
GGCGAAGCATGGGGTTGCGCAAGGAGCCAAGAAATGA

Domains

Predicted by InterProScan.

Fimbrial assembly protein (PilN) (PilN)

(100-177)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  PDB 5EOU

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilN Legionella pneumophila strain ERS1305867

41.714

88.384

0.369