Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL/pilP   Type   Machinery gene
Locus tag   AT700_RS26270 Genome accession   NZ_LN831024
Coordinates   5726546..5727070 (-) Length   174 a.a.
NCBI ID   WP_003095836.1    Uniprot ID   G3XCX7
Organism   Pseudomonas aeruginosa strain NCTC10332     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 5721546..5732070
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AT700_RS26255 (ERS445055_05371) aroB 5722662..5723768 (-) 1107 WP_003107839.1 3-dehydroquinate synthase -
  AT700_RS26260 (ERS445055_05372) aroK 5723818..5724336 (-) 519 WP_003095833.1 shikimate kinase AroK -
  AT700_RS26265 (ERS445055_05373) pilQ 5724348..5726492 (-) 2145 WP_012614629.1 type 4a pilus secretin PilQ Machinery gene
  AT700_RS26270 (ERS445055_05374) comL/pilP 5726546..5727070 (-) 525 WP_003095836.1 type 4a pilus biogenesis lipoprotein PilP Machinery gene
  AT700_RS26275 (ERS445055_05375) pilO 5727067..5727690 (-) 624 WP_003103268.1 type 4a pilus biogenesis protein PilO Machinery gene
  AT700_RS26280 (ERS445055_05376) pilN 5727687..5728283 (-) 597 WP_003095839.1 type 4a pilus biogenesis protein PilN Machinery gene
  AT700_RS26285 (ERS445055_05377) pilM 5728283..5729347 (-) 1065 WP_003110888.1 type IV pilus assembly protein PilM Machinery gene
  AT700_RS26290 (ERS445055_05378) - 5729532..5732003 (+) 2472 WP_003103276.1 penicillin-binding protein 1A -

Sequence

Protein


Download         Length: 174 a.a.        Molecular weight: 19053.84 Da        Isoelectric Point: 9.4114

>NTDB_id=991405 AT700_RS26270 WP_003095836.1 5726546..5727070(-) (comL/pilP) [Pseudomonas aeruginosa strain NCTC10332]
MRARLILSSLLLASLAGCGGGSDFADLQSYMDEVRARPKGTIEPLPKFQPYEAFTYSAASLRSPFQPPVKIDLTVRQKGN
KVIKPDETRVKQFLEGFNIETFEMVGTLSNAQGTFALVKGAGGVHRVRVGDYLGRNDGKVVGISEGKIDVIEIVPDGEGN
WLERPRSLTLKERS

Nucleotide


Download         Length: 525 bp        

>NTDB_id=991405 AT700_RS26270 WP_003095836.1 5726546..5727070(-) (comL/pilP) [Pseudomonas aeruginosa strain NCTC10332]
ATGAGAGCCCGCCTGATTCTGAGCAGCCTGCTGCTCGCCAGCCTGGCCGGATGCGGCGGCGGTTCCGATTTCGCCGATCT
GCAGTCCTACATGGACGAGGTTCGCGCCCGGCCCAAGGGCACCATCGAGCCGTTGCCGAAGTTCCAGCCGTACGAGGCCT
TCACCTATAGCGCCGCGTCGCTACGCAGCCCGTTCCAGCCGCCGGTGAAGATCGACCTGACCGTGCGGCAGAAGGGCAAC
AAGGTGATCAAGCCCGACGAGACGCGGGTCAAGCAGTTCCTGGAAGGCTTCAACATCGAGACCTTCGAGATGGTCGGCAC
CCTGTCCAACGCCCAGGGCACCTTCGCCCTGGTGAAGGGCGCGGGTGGCGTGCACCGGGTGAGGGTCGGGGACTACCTGG
GGCGCAACGACGGCAAGGTCGTCGGCATCAGCGAAGGAAAAATAGACGTGATCGAAATCGTTCCTGACGGAGAGGGGAAC
TGGCTGGAGCGTCCGCGCAGCCTGACTCTCAAGGAACGCTCCTGA

Domains

Predicted by InterProScan.

Pilus assembly protein, PilP (PilP)

(26-170)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  PDB 2Y4X
  PDB 2Y4Y

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL/pilP Acinetobacter baylyi ADP1

36.416

99.425

0.362

Multiple sequence alignment