Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA/comE1   Type   Machinery gene
Locus tag   AT700_RS09085 Genome accession   NZ_LN831024
Coordinates   1961343..1961672 (+) Length   109 a.a.
NCBI ID   WP_003104586.1    Uniprot ID   Q9HZ87
Organism   Pseudomonas aeruginosa strain NCTC10332     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1956343..1966672
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AT700_RS09070 (ERS445055_01849) - 1956957..1957919 (+) 963 WP_016253165.1 UDP-glucose 4-epimerase family protein -
  AT700_RS09075 (ERS445055_01850) - 1957919..1958956 (+) 1038 WP_003452706.1 MraY family glycosyltransferase -
  AT700_RS09080 (ERS445055_01851) - 1959154..1961151 (+) 1998 WP_003122257.1 polysaccharide biosynthesis protein -
  AT700_RS09085 (ERS445055_01852) comEA/comE1 1961343..1961672 (+) 330 WP_003104586.1 ComEA family DNA-binding protein Machinery gene
  AT700_RS09095 (ERS445055_01854) - 1961889..1963085 (-) 1197 WP_003110849.1 amino acid aminotransferase -
  AT700_RS09100 uvrB 1963273..1965284 (+) 2012 Protein_1823 excinuclease ABC subunit UvrB -

Sequence

Protein


Download         Length: 109 a.a.        Molecular weight: 11351.31 Da        Isoelectric Point: 8.0459

>NTDB_id=991350 AT700_RS09085 WP_003104586.1 1961343..1961672(+) (comEA/comE1) [Pseudomonas aeruginosa strain NCTC10332]
MHLIKSALLLILFACLPFSASAAPVAVAKNPLAATTPATTVSPGEQVNINTVDEAALIRGLNGVGEAKARAILEYRAAHG
PFVSVDQLLEVKGVGPALLEKNRARIVIE

Nucleotide


Download         Length: 330 bp        

>NTDB_id=991350 AT700_RS09085 WP_003104586.1 1961343..1961672(+) (comEA/comE1) [Pseudomonas aeruginosa strain NCTC10332]
ATGCACCTAATCAAATCCGCTCTGCTTCTCATCCTGTTCGCCTGTCTTCCGTTTTCGGCTTCCGCCGCACCGGTCGCCGT
CGCCAAGAATCCGCTGGCCGCAACGACACCTGCGACGACCGTGTCGCCGGGGGAGCAGGTCAATATCAATACGGTCGATG
AGGCCGCCCTGATACGGGGGCTCAACGGTGTCGGCGAGGCCAAGGCCAGGGCGATCCTCGAGTATCGTGCGGCCCATGGT
CCGTTCGTCTCGGTGGATCAACTGCTGGAAGTGAAAGGGGTAGGCCCGGCGTTGCTGGAGAAGAACCGGGCGCGGATCGT
CATCGAGTGA

Domains

Predicted by InterProScan.

Helix-hairpin-helix motif (HHH_3)

(44-106)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q9HZ87

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA/comE1 Glaesserella parasuis strain SC1401

40.385

95.413

0.385