Detailed information NTG0991345

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: AT700_RS06650
• Genome accession: NZ_LN831024
• Coordinates: 1433834..1434838 (+)
• Length: 334 a.a.
• NCBI ID: WP_003113871.1
• Uniprot ID: A0A0H2ZEU1
• Organism: Pseudomonas aeruginosa strain NCTC10332
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 1428834..1439838

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
AT700_RS06620 (ERS445055_01338)	fghA	1428927..1429778 (+)	852	WP_003113869.1	S-formylglutathione hydrolase	-
AT700_RS06625 (ERS445055_01339)	ispF	1429849..1430322 (+)	474	WP_003098560.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
AT700_RS06630 (ERS445055_01340)	truD	1430319..1431386 (+)	1068	WP_004345456.1	tRNA pseudouridine(13) synthase TruD	-
AT700_RS06635 (ERS445055_01341)	surE	1431374..1432123 (+)	750	WP_003092341.1	5'/3'-nucleotidase SurE	-
AT700_RS06640 (ERS445055_01342)	-	1432156..1432790 (+)	635	Protein_1330	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
AT700_RS06645 (ERS445055_01344)	-	1432836..1433729 (+)	894	WP_003143263.1	peptidoglycan DD-metalloendopeptidase family protein	-
AT700_RS06650 (ERS445055_01345)	rpoS	1433834..1434838 (+)	1005	WP_003113871.1	RNA polymerase sigma factor RpoS	Regulator
AT700_RS06655 (ERS445055_01347)	fdxA	1435265..1435588 (-)	324	WP_003092272.1	ferredoxin FdxA	-
AT700_RS06660 (ERS445055_01348)	mutS	1435655..1438222 (-)	2568	WP_003113873.1	DNA mismatch repair protein MutS	-
AT700_RS06665 (ERS445055_01349)	-	1438348..1439355 (-)	1008	WP_003098486.1	TolB family protein	-

Sequence

Protein

• Length: 334 a.a.
• Molecular weight: 38235.38 Da
• Isoelectric Point: 5.0478

>NTDB_id=991345 AT700_RS06650 WP_003113871.1 1433834..1434838(+) (rpoS) [Pseudomonas aeruginosa strain NCTC10332]
MALKKEGPEFDHDDEVLLLEPGIMLDESSADEQPSPRATPKATTSFSSKQHKHIDYTRALDATQLYLNEIGFSPLLTPEE
EVHFARLAQKGDPAGRKRMIESNLRLVVKIARRYVNRGLSLLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIE
RAIMNQTRTIRLPIHVVKELNVYLRAARELTHKLDHEPSPEEIANLLEKPVAEVKRMLGLNERVTSVDVSLGPDSDKTLL
DTLTDDRPTDPCELLQDDDLSESIDQWLTELTDKQREVVIRRFGLRGHESSTLEEVGQEIGLTRERVRQIQVEALKRLRE
ILEKNGLSSDALFQ

Nucleotide

• Length: 1005 bp

>NTDB_id=991345 AT700_RS06650 WP_003113871.1 1433834..1434838(+) (rpoS) [Pseudomonas aeruginosa strain NCTC10332]
ATGGCACTCAAAAAAGAAGGGCCGGAGTTTGACCACGATGATGAAGTGCTCCTCCTGGAGCCCGGCATCATGCTGGACGA
GTCGTCTGCCGACGAGCAGCCTTCTCCCCGGGCAACTCCAAAAGCCACCACTTCCTTCTCTTCCAAACAACACAAGCACA
TCGACTACACGCGCGCGTTGGACGCAACGCAGCTGTATCTCAACGAAATCGGTTTCTCGCCCCTGTTGACGCCCGAAGAG
GAAGTCCACTTCGCTCGTCTGGCGCAGAAGGGCGATCCCGCTGGTCGGAAGCGGATGATCGAGAGCAACCTGCGGTTGGT
GGTGAAGATCGCCCGGCGCTATGTCAATCGCGGACTGTCCCTGCTCGACCTGATCGAGGAAGGCAACCTAGGCCTGATCC
GCGCCGTGGAGAAGTTCGATCCGGAGCGCGGATTCCGGTTCTCGACCTACGCCACCTGGTGGATCCGCCAGACCATCGAA
CGGGCCATCATGAACCAGACCCGGACCATTCGCTTGCCGATCCATGTGGTCAAGGAGCTCAACGTCTACCTGCGTGCGGC
GCGGGAACTGACCCACAAGCTCGACCACGAACCTTCCCCCGAAGAAATCGCCAACCTGCTGGAGAAGCCGGTCGCCGAGG
TCAAGCGCATGCTCGGCCTGAACGAACGGGTGACTTCGGTAGACGTCTCTCTTGGTCCGGACTCGGACAAGACCCTGCTG
GATACGCTCACCGACGATCGCCCCACCGATCCGTGCGAGCTGCTGCAGGATGACGATCTCAGCGAAAGCATCGACCAGTG
GCTGACGGAACTCACCGACAAGCAGCGTGAGGTGGTGATTCGCCGCTTCGGCTTGCGCGGTCACGAAAGCAGCACGCTGG
AAGAGGTCGGCCAGGAAATCGGCCTGACCCGCGAGCGGGTTCGTCAGATCCAGGTCGAGGCGCTGAAGCGCCTGCGGGAG
ATCCTGGAGAAGAATGGCCTGTCGAGTGACGCGCTGTTCCAGTGA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (179-253)

• Sigma-70 region 2 (Sigma70_r2) (99-168)

• Sigma-70, region 4 (Sigma70_r4) (267-320)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (61-94)

3D structure

• AlphaFold DB: A0A0H2ZEU1

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	66.463	98.204	0.653