Detailed information    

insolico Bioinformatically predicted

Overview

Name   HI0659   Type   Machinery gene
Locus tag   SP4011_RS08760 Genome accession   NZ_AP026968
Coordinates   1728768..1729061 (-) Length   97 a.a.
NCBI ID   WP_112445038.1    Uniprot ID   -
Organism   Streptococcus parapneumoniae strain SP4011     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
IS/Tn 1729104..1729595 1728768..1729061 flank 43


Gene organization within MGE regions


Location: 1728768..1729595
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SP4011_RS08760 (SP4011_16890) HI0659 1728768..1729061 (-) 294 WP_112445038.1 helix-turn-helix domain-containing protein Machinery gene
  SP4011_RS08765 (SP4011_16900) - 1729110..1729595 (-) 486 Protein_1682 transposase -

Sequence

Protein


Download         Length: 97 a.a.        Molecular weight: 10758.33 Da        Isoelectric Point: 4.8723

>NTDB_id=99130 SP4011_RS08760 WP_112445038.1 1728768..1729061(-) (HI0659) [Streptococcus parapneumoniae strain SP4011]
MENSAIGSNWKDVRSQLFTKEEILESDMRVAIMSELIEARHDQGISQKKLEEFSGVSQPVIARMETGKTSPQLDTVLKVL
ASLGKTLAVVPLEQEKS

Nucleotide


Download         Length: 294 bp        

>NTDB_id=99130 SP4011_RS08760 WP_112445038.1 1728768..1729061(-) (HI0659) [Streptococcus parapneumoniae strain SP4011]
ATGGAGAATAGTGCTATTGGGAGTAACTGGAAGGATGTCCGATCTCAACTCTTTACAAAGGAGGAAATTCTTGAAAGTGA
TATGCGAGTGGCTATCATGAGTGAGCTGATTGAGGCTAGGCATGACCAAGGAATCAGCCAGAAAAAGCTGGAAGAATTCA
GTGGAGTAAGCCAGCCTGTCATAGCTAGGATGGAAACAGGCAAGACAAGTCCTCAGTTGGATACAGTCTTGAAAGTTTTA
GCCAGTTTAGGAAAGACACTAGCAGTCGTCCCCCTTGAACAGGAAAAGAGTTGA

Domains

Predicted by InterproScan.

Helix-turn-helix (HTH_3)

(38-88)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  HI0659 Haemophilus influenzae Rd KW20

59.551

91.753

0.546

Multiple sequence alignment