Detailed information    

insolico Bioinformatically predicted

Overview

Name   pptA   Type   Regulator
Locus tag   VV28_RS15470 Genome accession   NZ_LN680001
Coordinates   3089410..3090120 (-) Length   236 a.a.
NCBI ID   WP_003229230.1    Uniprot ID   O34977
Organism   Bacillus subtilis strain BS34A     
Function   export ComS (predicted from homology)   
Competence regulation

Genomic Context

Location: 3084410..3095120
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VV28_RS15450 (BS34A_32630) cysK 3084461..3085396 (+) 936 WP_003229237.1 cysteine synthase A -
  VV28_RS15455 (BS34A_32640) pepV 3085430..3086821 (-) 1392 WP_004399126.1 dipeptidase PepV -
  VV28_RS15460 (BS34A_32650) pbuO 3086918..3088216 (+) 1299 WP_003229234.1 hypoxanthine/guanine permease PbuO -
  VV28_RS15465 (BS34A_32660) ythQ 3088256..3089413 (-) 1158 WP_003229232.1 ABC transporter permease -
  VV28_RS15470 (BS34A_32670) pptA 3089410..3090120 (-) 711 WP_003229230.1 ABC transporter ATP-binding protein Regulator
  VV28_RS15475 (BS34A_32680) ytzE 3090411..3090632 (+) 222 WP_003152337.1 DeoR family transcriptional regulator -
  VV28_RS15480 (BS34A_32690) rsuA 3090753..3091472 (-) 720 WP_003229226.1 pseudouridine synthase -
  VV28_RS15485 (BS34A_32700) murJ 3091541..3093175 (-) 1635 WP_003229224.1 lipid II flippase MurJ -
  VV28_RS15490 (BS34A_32710) ytfP 3093377..3094639 (+) 1263 WP_003229222.1 NAD(P)/FAD-dependent oxidoreductase -

Sequence

Protein


Download         Length: 236 a.a.        Molecular weight: 26506.56 Da        Isoelectric Point: 5.3508

>NTDB_id=991292 VV28_RS15470 WP_003229230.1 3089410..3090120(-) (pptA) [Bacillus subtilis strain BS34A]
MTNLLEASIEQAGYTSRKKVLTDVFLEVRKGELVGLIGANGAGKSTAIKAILGLSEDFKGHIAWNDCSFAYIPEHPSFYE
ELTLWEHLDLISTLHGIEESEFAHRAQSLLQTFSLDHVKHELPVTFSKGMQQKLMLIQAFLSKPDMYVIDEPFIGLDPIS
TKRFVDMLKAEKERGAGILMCTHVLDTAEKICDRFYMIEKGSLFLQGTLKDVQDKTGLEGQSLLDCFYKAVQGDRL

Nucleotide


Download         Length: 711 bp        

>NTDB_id=991292 VV28_RS15470 WP_003229230.1 3089410..3090120(-) (pptA) [Bacillus subtilis strain BS34A]
TTGACAAATTTGCTTGAAGCTTCAATAGAACAGGCCGGGTATACAAGCCGAAAAAAAGTGCTCACCGATGTTTTTCTGGA
AGTCAGAAAAGGGGAACTGGTTGGACTGATCGGAGCTAACGGCGCAGGAAAAAGCACCGCAATCAAGGCGATACTCGGCC
TTTCAGAAGATTTTAAAGGGCATATTGCCTGGAACGACTGTTCATTTGCATATATTCCGGAGCATCCGTCCTTCTACGAA
GAACTGACGCTGTGGGAGCATTTGGATCTGATCAGCACACTTCACGGCATTGAAGAGAGTGAATTTGCGCATCGGGCCCA
AAGCCTGCTGCAGACGTTTTCGCTAGATCATGTCAAACATGAGCTGCCTGTCACCTTTTCGAAGGGCATGCAGCAAAAAC
TAATGCTTATCCAGGCCTTTCTCTCTAAGCCGGATATGTATGTGATTGATGAACCGTTTATCGGCCTTGATCCGATATCG
ACGAAACGCTTTGTGGACATGCTTAAGGCTGAAAAAGAACGTGGAGCCGGAATTCTTATGTGCACGCATGTACTCGATAC
CGCGGAAAAAATCTGTGACCGGTTTTATATGATTGAGAAAGGTTCATTATTTCTCCAAGGCACGTTAAAAGATGTTCAGG
ACAAGACCGGATTAGAGGGGCAGTCATTGCTTGACTGTTTTTATAAGGCAGTTCAAGGTGATCGGCTATGA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(21-153)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB O34977

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pptA Streptococcus salivarius strain HSISS4

44.017

99.153

0.436
  pptA Streptococcus thermophilus LMD-9

43.59

99.153

0.432