Detailed information    

insolico Bioinformatically predicted

Overview

Name   ylbF   Type   Regulator
Locus tag   VV28_RS07925 Genome accession   NZ_LN680001
Coordinates   1568397..1568846 (+) Length   149 a.a.
NCBI ID   WP_003221370.1    Uniprot ID   G4NWT8
Organism   Bacillus subtilis strain BS34A     
Function   accelerate the production of Spo0A~P (predicted from homology)   
Competence regulation

Genomic Context

Location: 1563397..1573846
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VV28_RS07885 (BS34A_16510) ctaE 1563414..1564037 (+) 624 WP_003232244.1 cytochrome c oxidase subunit III -
  VV28_RS07890 (BS34A_16520) ctaF 1564040..1564372 (+) 333 WP_003232242.1 cytochrome c oxidase subunit IVB -
  VV28_RS07895 (BS34A_16530) ctaG 1564399..1565292 (+) 894 WP_003244967.1 cytochrome c oxidase assembly factor CtaG -
  VV28_RS07900 (BS34A_16540) ylbA 1565324..1565686 (-) 363 WP_003232238.1 YugN family protein -
  VV28_RS07905 (BS34A_16550) ylbB 1565826..1566272 (+) 447 WP_003221362.1 CBS domain-containing protein -
  VV28_RS07910 (BS34A_16560) ylbC 1566356..1567396 (+) 1041 WP_003245434.1 CAP domain-containing protein -
  VV28_RS07915 (BS34A_16570) ylbD 1567628..1568026 (+) 399 WP_003232233.1 YlbD family protein -
  VV28_RS07920 (BS34A_16580) ylbE 1568042..1568281 (+) 240 WP_003232231.1 YlbE-like family protein -
  VV28_RS07925 (BS34A_16590) ylbF 1568397..1568846 (+) 450 WP_003221370.1 regulatory iron-sulfur-containing complex subunit RicF Regulator
  VV28_RS07930 (BS34A_16600) ylbG 1568901..1569173 (+) 273 WP_009967171.1 YlbG family protein -
  VV28_RS07935 (BS34A_16620) rsmD 1569496..1570050 (+) 555 WP_003232227.1 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD -
  VV28_RS07940 (BS34A_16630) coaD 1570055..1570540 (+) 486 WP_003245283.1 pantetheine-phosphate adenylyltransferase -
  VV28_RS07945 (BS34A_16640) spoVV 1570551..1571777 (-) 1227 WP_003245492.1 dipicolinic acid transporter SpoVV -
  VV28_RS07950 (BS34A_16650) ylbK 1571958..1572740 (+) 783 WP_003232221.1 patatin family protein -
  VV28_RS07955 (BS34A_16660) sepM 1572742..1573767 (+) 1026 WP_003245451.1 protease DdcP Regulator

Sequence

Protein


Download         Length: 149 a.a.        Molecular weight: 16913.96 Da        Isoelectric Point: 4.9284

>NTDB_id=991234 VV28_RS07925 WP_003221370.1 1568397..1568846(+) (ylbF) [Bacillus subtilis strain BS34A]
MYATMESVRLQSEAQQLAEMILQSETAENYRNCYKRLQEDEEAGRIIRSFIKIKEQYEDVQRFGKYHPDYREISRKMREI
KRELDLNDKVADFKRAENELQSILDEVSVEIGTAVSEHVKVPTGNPYFDGLSSCGGGCGSGGSCGCKVS

Nucleotide


Download         Length: 450 bp        

>NTDB_id=991234 VV28_RS07925 WP_003221370.1 1568397..1568846(+) (ylbF) [Bacillus subtilis strain BS34A]
ATGTATGCGACGATGGAATCCGTGCGGCTTCAAAGTGAAGCTCAGCAGCTTGCCGAGATGATTCTGCAGTCGGAGACGGC
TGAGAACTACCGCAATTGTTACAAGCGTCTCCAGGAAGATGAAGAGGCAGGTCGGATTATTCGTTCTTTTATCAAAATAA
AAGAGCAGTATGAGGATGTACAGCGTTTTGGCAAATATCATCCTGACTATAGAGAAATATCCCGGAAAATGAGGGAGATC
AAACGTGAGCTGGACCTGAACGATAAGGTGGCTGACTTCAAGAGAGCTGAAAATGAGCTCCAGTCCATTCTTGATGAGGT
CAGCGTTGAGATTGGGACAGCTGTTTCGGAGCATGTGAAAGTTCCGACTGGGAACCCTTATTTTGACGGTTTGTCTTCAT
GCGGAGGCGGCTGCGGTTCAGGCGGAAGCTGCGGATGTAAAGTGTCCTGA

Domains

Predicted by InterProScan.

Control of competence regulator ComK, YlbF/YmcA (Com_YlbF)

(12-115)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4NWT8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ylbF Bacillus subtilis subsp. subtilis str. 168

100

100

1