Detailed information    

insolico Bioinformatically predicted

Overview

Name   rapC   Type   Regulator
Locus tag   VV28_RS06615 Genome accession   NZ_LN680001
Coordinates   1315843..1316979 (+) Length   378 a.a.
NCBI ID   WP_010886491.1    Uniprot ID   Q00828
Organism   Bacillus subtilis strain BS34A     
Function   inhibit the DNA-binding function of ComA (predicted from homology)   
Competence regulation

Genomic Context

Location: 1310843..1321979
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VV28_RS06595 (BS34A_13710) uxaA 1311293..1312786 (+) 1494 WP_003245409.1 UxaA family hydrolase -
  VV28_RS06600 (BS34A_13720) yjnA 1312825..1313589 (-) 765 WP_003245643.1 sulfite exporter TauE/SafE family protein -
  VV28_RS06605 (BS34A_13730) bstD 1313814..1314278 (-) 465 WP_003245144.1 DinB family protein -
  VV28_RS06610 (BS34A_13740) yjoB 1314427..1315698 (+) 1272 WP_003245490.1 ATPase YjoB -
  VV28_RS06615 (BS34A_13750) rapC 1315843..1316979 (+) 1137 WP_010886491.1 response regulator aspartate phosphatase RapA Regulator
  VV28_RS06620 (BS34A_13760) phrA 1316969..1317103 (+) 135 WP_003245487.1 phosphatase RapA inhibitor PhrA -
  VV28_RS06625 (BS34A_13770) yjpA 1317134..1317391 (-) 258 WP_003232731.1 YciI family protein -
  VV28_RS06630 (BS34A_13780) xlyB 1317512..1318465 (+) 954 WP_003244876.1 N-acetylmuramoyl-L-alanine amidase -
  VV28_RS06635 (BS34A_13790) yjqA 1318505..1318882 (-) 378 WP_003245254.1 PH domain-containing protein -
  VV28_RS06640 (BS34A_13800) pghB 1318988..1319590 (+) 603 WP_003244789.1 poly-gamma-glutamate hydrolase family protein -
  VV28_RS06645 (BS34A_13810) xpdC 1319667..1320503 (+) 837 WP_003245071.1 manganese catalase family protein -
  VV28_RS06650 (BS34A_13820) xkdA 1320547..1321143 (-) 597 WP_003232721.1 ImmA/IrrE family metallo-endopeptidase -
  VV28_RS06655 (BS34A_13830) xre 1321306..1321647 (-) 342 WP_003232719.1 HTH-type transcriptional regulator Xre -

Sequence

Protein


Download         Length: 378 a.a.        Molecular weight: 44974.16 Da        Isoelectric Point: 4.7611

>NTDB_id=991224 VV28_RS06615 WP_010886491.1 1315843..1316979(+) (rapC) [Bacillus subtilis strain BS34A]
MRMKQTIPSSYVGLKINEWYTHIRQFHVAEAERVKLEVEREIEDMEEDQDLLLYYSLMEFRHRVMLDYIKPFGEDTSQLE
FSELLEDIEGNQYKLTGLLEYYFNFFRGMYEFKQKMFVSAMMYYKRAEKNLALVSDDIEKAEFAFKMAEIFYNLKQTYVS
MSYAVQALETYQMYETYTVRRIQCEFVIAGNYDDMQYPERALPHLELALDLAKKEGNPRLISSALYNLGNCYEKMGELQK
AAEYFGKSVSICKSEKFDNLPHSIYSLTQVLYKQKNDAEAQKKYREGLEIARQYSDELFVELFQFLHALYGKNIDTESVS
HTFQFLEEHMLYPYIEELAHDAAQFYIENGQPEKALSFYEKMVHAQKQIQRGDCLYEI

Nucleotide


Download         Length: 1137 bp        

>NTDB_id=991224 VV28_RS06615 WP_010886491.1 1315843..1316979(+) (rapC) [Bacillus subtilis strain BS34A]
TTGAGGATGAAGCAGACGATTCCGTCCTCTTATGTCGGGCTTAAAATTAATGAATGGTATACTCATATCCGGCAGTTCCA
CGTCGCTGAAGCCGAACGGGTCAAGCTCGAAGTAGAAAGAGAAATTGAGGATATGGAAGAAGACCAAGATTTGCTGCTGT
ATTATTCTTTAATGGAGTTCAGGCACCGTGTCATGCTGGATTACATTAAGCCTTTTGGAGAGGACACGTCGCAGCTAGAG
TTTTCAGAATTGTTAGAAGACATCGAAGGGAATCAGTACAAGCTGACAGGGCTTCTCGAATATTACTTTAATTTTTTTCG
AGGAATGTATGAATTTAAGCAGAAGATGTTTGTCAGTGCCATGATGTATTATAAACGGGCAGAAAAGAATCTTGCCCTCG
TCTCGGATGATATTGAGAAAGCAGAGTTTGCTTTTAAAATGGCTGAGATTTTTTACAATTTAAAACAAACCTATGTTTCG
ATGAGCTACGCCGTTCAGGCATTAGAAACATACCAAATGTATGAAACGTACACCGTCCGCAGAATCCAATGTGAATTCGT
TATTGCAGGTAATTATGATGATATGCAGTATCCAGAAAGAGCATTGCCCCACTTAGAACTGGCTTTAGATCTTGCAAAGA
AAGAAGGCAATCCCCGCCTGATCAGTTCTGCCCTATATAATCTCGGAAACTGCTATGAGAAAATGGGTGAACTGCAAAAG
GCAGCCGAATACTTTGGGAAATCTGTTTCTATTTGCAAGTCGGAAAAGTTCGATAATCTTCCGCATTCTATCTACTCTTT
AACACAAGTTCTGTATAAACAAAAAAATGACGCCGAAGCGCAAAAAAAGTATCGTGAAGGATTGGAAATCGCCCGTCAAT
ACAGTGATGAATTATTTGTGGAGCTTTTTCAATTTTTACATGCGTTATACGGAAAAAACATTGACACAGAATCAGTCTCA
CACACCTTTCAATTTCTTGAAGAACATATGCTGTATCCTTATATTGAAGAGCTGGCGCATGATGCTGCCCAATTCTATAT
AGAAAACGGACAGCCCGAAAAAGCACTTTCATTTTATGAGAAAATGGTGCACGCACAAAAACAAATCCAGAGAGGAGATT
GTTTATATGAAATCTAA

Domains

Predicted by InterProScan.

Tetratricopeptide repeat (TPR_12)

(221-293)

response regulator aspartate phosphatase H, N terminal (RapH_N)

(6-67)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q00828

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rapC Bacillus subtilis subsp. subtilis str. 168

44.681

99.471

0.444
  rapF Bacillus subtilis subsp. subtilis str. 168

41.689

100

0.418