Detailed information    

insolico Bioinformatically predicted

Overview

Name   lrpC   Type   Machinery gene
Locus tag   VV28_RS02365 Genome accession   NZ_LN680001
Coordinates   476044..476478 (+) Length   144 a.a.
NCBI ID   WP_003246585.1    Uniprot ID   A0ABU0V5G7
Organism   Bacillus subtilis strain BS34A     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 471044..481478
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VV28_RS02335 (BS34A_04800) ydaD 471694..472554 (+) 861 WP_003246648.1 SDR family oxidoreductase -
  VV28_RS02340 (BS34A_04810) lyxE 472570..473073 (+) 504 WP_003234400.1 D-lyxose ketol-isomerase -
  VV28_RS02345 (BS34A_04820) ydaF 473159..473710 (+) 552 WP_003246691.1 GNAT family protein -
  VV28_RS02350 (BS34A_04830) ydaG 473788..474210 (+) 423 WP_003234396.1 pyridoxamine 5'-phosphate oxidase family protein -
  VV28_RS02355 (BS34A_04850) amj 474716..475525 (+) 810 WP_003234394.1 lipid II flippase Amj -
  VV28_RS02360 (BS34A_04860) ydzA 475569..475859 (-) 291 WP_003246602.1 DUF3817 domain-containing protein -
  VV28_RS02365 (BS34A_04870) lrpC 476044..476478 (+) 435 WP_003246585.1 transcriptional regulator LrpC Machinery gene
  VV28_RS02370 (BS34A_04880) topB 476543..478726 (+) 2184 WP_003246684.1 DNA topoisomerase III -
  VV28_RS02375 (BS34A_04890) ephJ 478929..480017 (+) 1089 WP_003246551.1 lipoprotein -
  VV28_RS02380 (BS34A_04900) epsK 479998..480849 (+) 852 WP_003246541.1 cyclic-di-GMP receptor EpsK -

Sequence

Protein


Download         Length: 144 a.a.        Molecular weight: 16450.03 Da        Isoelectric Point: 7.7037

>NTDB_id=991189 VV28_RS02365 WP_003246585.1 476044..476478(+) (lrpC) [Bacillus subtilis strain BS34A]
MKLDQIDLNIIEELKKDSRLSMRELGRKIKLSPPSVTERVRQLESFGIIKQYTLEVDQKKLGLPVSCIVEATVKNADYER
FKSYIQTLPNIEFCYRIAGAACYMLKINAESLEAVEDFINKTSPYAQTVTHVIFSEIDTKNGRG

Nucleotide


Download         Length: 435 bp        

>NTDB_id=991189 VV28_RS02365 WP_003246585.1 476044..476478(+) (lrpC) [Bacillus subtilis strain BS34A]
ATGAAACTTGACCAGATTGATCTGAATATCATTGAGGAGCTGAAGAAGGACAGCCGTTTGTCGATGAGGGAATTAGGCAG
AAAAATTAAGCTGTCGCCTCCATCTGTAACAGAACGGGTAAGACAGCTTGAATCGTTTGGCATCATCAAGCAATACACGC
TGGAGGTCGACCAGAAAAAACTGGGGCTTCCCGTTTCCTGCATTGTGGAAGCAACCGTTAAAAACGCGGATTATGAGCGG
TTCAAAAGCTATATTCAAACATTGCCGAATATTGAATTTTGCTACCGGATTGCGGGTGCAGCCTGCTATATGCTGAAAAT
CAATGCCGAAAGCCTCGAAGCGGTAGAAGATTTCATTAACAAAACATCGCCCTACGCGCAAACCGTCACTCACGTCATTT
TCTCAGAAATTGACACGAAAAACGGGCGCGGTTAG

Domains

Predicted by InterProScan.

Lrp/AsnC ligand binding domain (AsnC_trans_reg)

(70-135)

Winged helix-turn-helix DNA-binding (HTH_24)

(3-50)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  lrpC Bacillus subtilis subsp. subtilis str. 168

100

100

1